miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30164 3' -51.8 NC_006273.1 + 1148 0.67 0.990876
Target:  5'- -uGCGGcgGGGACgGUGGUgAGGAcGGGg -3'
miRNA:   3'- guUGCCuaCCUUG-UACCGgUUCU-CCU- -5'
30164 3' -51.8 NC_006273.1 + 3446 0.69 0.97661
Target:  5'- gCGACGGAgaGGAGCGUGuccGCCGccGGGAa -3'
miRNA:   3'- -GUUGCCUa-CCUUGUAC---CGGUucUCCU- -5'
30164 3' -51.8 NC_006273.1 + 7696 0.67 0.993036
Target:  5'- gGGCGGcgGcGGCAgUGGCCGcggcagcggGGAGGAg -3'
miRNA:   3'- gUUGCCuaCcUUGU-ACCGGU---------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 40638 0.72 0.896723
Target:  5'- aGACGGG-GGGGCAcucuUGGCCGGGGacGGAg -3'
miRNA:   3'- gUUGCCUaCCUUGU----ACCGGUUCU--CCU- -5'
30164 3' -51.8 NC_006273.1 + 41086 0.67 0.990876
Target:  5'- -uGCGGcgGGGACgGUGGUgAGGAcGGGg -3'
miRNA:   3'- guUGCCuaCCUUG-UACCGgUUCU-CCU- -5'
30164 3' -51.8 NC_006273.1 + 44415 0.69 0.97131
Target:  5'- -cACGGA-GGAaguuACGUGGgUAGGAGGGc -3'
miRNA:   3'- guUGCCUaCCU----UGUACCgGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 51557 0.76 0.706916
Target:  5'- gGACGGggGGGugGUGGCgGcGGAGGAc -3'
miRNA:   3'- gUUGCCuaCCUugUACCGgU-UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 63751 0.67 0.989614
Target:  5'- --uCGGucUGGcGCGUGGCCGggcgcgccucucGGAGGAc -3'
miRNA:   3'- guuGCCu-ACCuUGUACCGGU------------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 65348 0.67 0.992013
Target:  5'- -uACGaGAUGGGAUGUacGGgCGGGGGGAg -3'
miRNA:   3'- guUGC-CUACCUUGUA--CCgGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 67405 0.68 0.978973
Target:  5'- gAACGGcUGGAACGugaaUGGCaagAAGAGGc -3'
miRNA:   3'- gUUGCCuACCUUGU----ACCGg--UUCUCCu -5'
30164 3' -51.8 NC_006273.1 + 71611 0.69 0.968359
Target:  5'- -cGCGGuguuagacAUGGGGCA-GGCCGugGGGGGAg -3'
miRNA:   3'- guUGCC--------UACCUUGUaCCGGU--UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 80809 0.69 0.975102
Target:  5'- gGACGGAgGGGuuguugguggcaacgACGUGGCCGcGGGGc -3'
miRNA:   3'- gUUGCCUaCCU---------------UGUACCGGUuCUCCu -5'
30164 3' -51.8 NC_006273.1 + 82485 0.69 0.968359
Target:  5'- -cACGGugcGGcGCGUGGCCGAGGaguGGAa -3'
miRNA:   3'- guUGCCua-CCuUGUACCGGUUCU---CCU- -5'
30164 3' -51.8 NC_006273.1 + 83338 0.68 0.983161
Target:  5'- cCGGCGuGGUGGGACccGGCgGcgccguggugGGAGGAc -3'
miRNA:   3'- -GUUGC-CUACCUUGuaCCGgU----------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 93835 0.69 0.974058
Target:  5'- -cGCGGAuuaUGGGAUGUGGCCucGAGu- -3'
miRNA:   3'- guUGCCU---ACCUUGUACCGGuuCUCcu -5'
30164 3' -51.8 NC_006273.1 + 101321 0.68 0.985002
Target:  5'- uGGCGGGaGGAGgGUGGaagGGGAGGAg -3'
miRNA:   3'- gUUGCCUaCCUUgUACCgg-UUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 103112 0.68 0.986686
Target:  5'- uGACGGAgguUGGGACAgaagGGac-GGAGGAa -3'
miRNA:   3'- gUUGCCU---ACCUUGUa---CCgguUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 109690 0.66 0.993864
Target:  5'- gGGCGGcgGGAACGguagcggggacggUGGCaucGGGGAa -3'
miRNA:   3'- gUUGCCuaCCUUGU-------------ACCGguuCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 122652 0.69 0.974058
Target:  5'- gCGACGGcgaAUGGGACGUGGaCCGcGAGu- -3'
miRNA:   3'- -GUUGCC---UACCUUGUACC-GGUuCUCcu -5'
30164 3' -51.8 NC_006273.1 + 125202 0.67 0.992013
Target:  5'- aUAGCGGcgGuGAAauccUGGCCGcgacGGAGGAg -3'
miRNA:   3'- -GUUGCCuaC-CUUgu--ACCGGU----UCUCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.