miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30164 3' -51.8 NC_006273.1 + 109690 0.66 0.993864
Target:  5'- gGGCGGcgGGAACGguagcggggacggUGGCaucGGGGAa -3'
miRNA:   3'- gUUGCCuaCCUUGU-------------ACCGguuCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 189844 0.68 0.980943
Target:  5'- --cCGGGUGGcaucugcGGCAUGGC-GGGGGGAg -3'
miRNA:   3'- guuGCCUACC-------UUGUACCGgUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 101321 0.68 0.985002
Target:  5'- uGGCGGGaGGAGgGUGGaagGGGAGGAg -3'
miRNA:   3'- gUUGCCUaCCUUgUACCgg-UUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 63751 0.67 0.989614
Target:  5'- --uCGGucUGGcGCGUGGCCGggcgcgccucucGGAGGAc -3'
miRNA:   3'- guuGCCu-ACCuUGUACCGGU------------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 1148 0.67 0.990876
Target:  5'- -uGCGGcgGGGACgGUGGUgAGGAcGGGg -3'
miRNA:   3'- guUGCCuaCCUUG-UACCGgUUCU-CCU- -5'
30164 3' -51.8 NC_006273.1 + 125202 0.67 0.992013
Target:  5'- aUAGCGGcgGuGAAauccUGGCCGcgacGGAGGAg -3'
miRNA:   3'- -GUUGCCuaC-CUUgu--ACCGGU----UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 7696 0.67 0.993036
Target:  5'- gGGCGGcgGcGGCAgUGGCCGcggcagcggGGAGGAg -3'
miRNA:   3'- gUUGCCuaCcUUGU-ACCGGU---------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 140693 0.67 0.993036
Target:  5'- aCGGCGGGUGGuggugGugGUGGUgGAGuGGu -3'
miRNA:   3'- -GUUGCCUACC-----UugUACCGgUUCuCCu -5'
30164 3' -51.8 NC_006273.1 + 162257 0.67 0.993036
Target:  5'- gCAGCGGcgGGAcucGCGacGGCCcuucugcGGAGGAa -3'
miRNA:   3'- -GUUGCCuaCCU---UGUa-CCGGu------UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 143779 0.68 0.978973
Target:  5'- --cUGGAcgcGGAACGUGacgguuGCCGAGGGGAa -3'
miRNA:   3'- guuGCCUa--CCUUGUAC------CGGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 67405 0.68 0.978973
Target:  5'- gAACGGcUGGAACGugaaUGGCaagAAGAGGc -3'
miRNA:   3'- gUUGCCuACCUUGU----ACCGg--UUCUCCu -5'
30164 3' -51.8 NC_006273.1 + 3446 0.69 0.97661
Target:  5'- gCGACGGAgaGGAGCGUGuccGCCGccGGGAa -3'
miRNA:   3'- -GUUGCCUa-CCUUGUAC---CGGUucUCCU- -5'
30164 3' -51.8 NC_006273.1 + 167927 0.77 0.696829
Target:  5'- gGACGGGUugGGAACAcagaGGCUGAGGGGAa -3'
miRNA:   3'- gUUGCCUA--CCUUGUa---CCGGUUCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 51557 0.76 0.706916
Target:  5'- gGACGGggGGGugGUGGCgGcGGAGGAc -3'
miRNA:   3'- gUUGCCuaCCUugUACCGgU-UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 40638 0.72 0.896723
Target:  5'- aGACGGG-GGGGCAcucuUGGCCGGGGacGGAg -3'
miRNA:   3'- gUUGCCUaCCUUGU----ACCGGUUCU--CCU- -5'
30164 3' -51.8 NC_006273.1 + 207335 0.71 0.93178
Target:  5'- -cACGGGUGGGGguuucucuuucuUAUGGCCGAGuGGc -3'
miRNA:   3'- guUGCCUACCUU------------GUACCGGUUCuCCu -5'
30164 3' -51.8 NC_006273.1 + 138471 0.7 0.958225
Target:  5'- cCGAUGuGUGGGACcUGGUCAagguAGAGGAa -3'
miRNA:   3'- -GUUGCcUACCUUGuACCGGU----UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 71611 0.69 0.968359
Target:  5'- -cGCGGuguuagacAUGGGGCA-GGCCGugGGGGGAg -3'
miRNA:   3'- guUGCC--------UACCUUGUaCCGGU--UCUCCU- -5'
30164 3' -51.8 NC_006273.1 + 122652 0.69 0.974058
Target:  5'- gCGACGGcgaAUGGGACGUGGaCCGcGAGu- -3'
miRNA:   3'- -GUUGCC---UACCUUGUACC-GGUuCUCcu -5'
30164 3' -51.8 NC_006273.1 + 93835 0.69 0.974058
Target:  5'- -cGCGGAuuaUGGGAUGUGGCCucGAGu- -3'
miRNA:   3'- guUGCCU---ACCUUGUACCGGuuCUCcu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.