miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30164 5' -56.3 NC_006273.1 + 110801 0.66 0.950696
Target:  5'- --aCCgCCUGCCUcUCCAuguCCAUgGUGg -3'
miRNA:   3'- guaGG-GGACGGAcAGGUu--GGUGgUAC- -5'
30164 5' -56.3 NC_006273.1 + 132755 0.66 0.950696
Target:  5'- cCGUUCCCcGCCUGUaCCAua-GCCGUa -3'
miRNA:   3'- -GUAGGGGaCGGACA-GGUuggUGGUAc -5'
30164 5' -56.3 NC_006273.1 + 97221 0.66 0.946546
Target:  5'- ---aCCC-GCCUGcCCGcaggccguggccGCCGCCAUGa -3'
miRNA:   3'- guagGGGaCGGACaGGU------------UGGUGGUAC- -5'
30164 5' -56.3 NC_006273.1 + 74248 0.66 0.942172
Target:  5'- gCAUCCCCaacaGCCU--UUGACCACCGUa -3'
miRNA:   3'- -GUAGGGGa---CGGAcaGGUUGGUGGUAc -5'
30164 5' -56.3 NC_006273.1 + 72972 0.66 0.937572
Target:  5'- -cUCCCgCUcgGCCUG-CCGACaCACCAg- -3'
miRNA:   3'- guAGGG-GA--CGGACaGGUUG-GUGGUac -5'
30164 5' -56.3 NC_006273.1 + 52757 0.66 0.937572
Target:  5'- -cUCCCCgGCCUcggCCAagagcgcgGCCACCAa- -3'
miRNA:   3'- guAGGGGaCGGAca-GGU--------UGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 125863 0.66 0.937572
Target:  5'- gUAUCUCCUacCCUGUCUccACCACCGUc -3'
miRNA:   3'- -GUAGGGGAc-GGACAGGu-UGGUGGUAc -5'
30164 5' -56.3 NC_006273.1 + 14643 0.67 0.916889
Target:  5'- --gCCCgaGCCacGUCgCGAUCACCAUGa -3'
miRNA:   3'- guaGGGgaCGGa-CAG-GUUGGUGGUAC- -5'
30164 5' -56.3 NC_006273.1 + 124098 0.67 0.916889
Target:  5'- uCAUCCUCgccGUCUGUCucuuCAGCCACCu-- -3'
miRNA:   3'- -GUAGGGGa--CGGACAG----GUUGGUGGuac -5'
30164 5' -56.3 NC_006273.1 + 94342 0.67 0.911147
Target:  5'- cCGUCCgCggGCCcGUCCcACCGCCcUGg -3'
miRNA:   3'- -GUAGGgGa-CGGaCAGGuUGGUGGuAC- -5'
30164 5' -56.3 NC_006273.1 + 90339 0.67 0.905179
Target:  5'- aCGUCUCCUGaCUGgCCGuACCGCCGg- -3'
miRNA:   3'- -GUAGGGGACgGACaGGU-UGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 135714 0.68 0.88594
Target:  5'- aGUCCCCcggcGCCcucgccggUGUCCGGagUCACCGUGg -3'
miRNA:   3'- gUAGGGGa---CGG--------ACAGGUU--GGUGGUAC- -5'
30164 5' -56.3 NC_006273.1 + 27949 0.68 0.879093
Target:  5'- -uUCCCauaGCCUGUCUAACUAgccuucCCGUGa -3'
miRNA:   3'- guAGGGga-CGGACAGGUUGGU------GGUAC- -5'
30164 5' -56.3 NC_006273.1 + 227027 0.68 0.879093
Target:  5'- uGUCUCUagaUGCCg--CCAGCCACCAa- -3'
miRNA:   3'- gUAGGGG---ACGGacaGGUUGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 41632 0.68 0.86477
Target:  5'- --gCCCCUGgCUG-CCAACCACa--- -3'
miRNA:   3'- guaGGGGACgGACaGGUUGGUGguac -5'
30164 5' -56.3 NC_006273.1 + 95004 0.68 0.86477
Target:  5'- -cUCCCCUcCCcccucucgaggGUCCGGCCGCCAg- -3'
miRNA:   3'- guAGGGGAcGGa----------CAGGUUGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 129734 0.68 0.857306
Target:  5'- -cUCUaCCUGCCUGUCCGAUacaCGUGa -3'
miRNA:   3'- guAGG-GGACGGACAGGUUGgugGUAC- -5'
30164 5' -56.3 NC_006273.1 + 43377 0.69 0.833767
Target:  5'- cCAUCUCCUGauggcgUUGUCgGGCCACCAg- -3'
miRNA:   3'- -GUAGGGGACg-----GACAGgUUGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 62923 0.69 0.833767
Target:  5'- aCAgCCCCacguuCCUGUUCGACCACCGg- -3'
miRNA:   3'- -GUaGGGGac---GGACAGGUUGGUGGUac -5'
30164 5' -56.3 NC_006273.1 + 194700 0.69 0.833767
Target:  5'- uGUCCCCUGCCacaucgccgcUGUCCAugcuuucgucaGCCucuCCGUc -3'
miRNA:   3'- gUAGGGGACGG----------ACAGGU-----------UGGu--GGUAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.