miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 3' -54.9 NC_006273.1 + 133444 0.66 0.978843
Target:  5'- aCGuGGuGCUGCGCCGuuauuaucgcagucaCGGCGGCGUGc -3'
miRNA:   3'- aGCuCC-CGAUGUGGUc--------------GCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 14924 0.66 0.97862
Target:  5'- cUGAGGGCUcguACGCCA-CGGCcgAACGa- -3'
miRNA:   3'- aGCUCCCGA---UGUGGUcGCUG--UUGCac -5'
30165 3' -54.9 NC_006273.1 + 185053 0.66 0.97862
Target:  5'- ----cGGCgaccaACACCGGCGccgGCGACGUGg -3'
miRNA:   3'- agcucCCGa----UGUGGUCGC---UGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 151998 0.66 0.97862
Target:  5'- cCGGGuGGCggcgGCAgCAGCc-CGACGUGg -3'
miRNA:   3'- aGCUC-CCGa---UGUgGUCGcuGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 66626 0.66 0.976294
Target:  5'- aUGAcGGGC-ACugUGcGCGACAACGUa -3'
miRNA:   3'- aGCU-CCCGaUGugGU-CGCUGUUGCAc -5'
30165 3' -54.9 NC_006273.1 + 33277 0.66 0.976294
Target:  5'- gCG-GGGCc-UugCGGCGGCAGCGg- -3'
miRNA:   3'- aGCuCCCGauGugGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 104666 0.66 0.976294
Target:  5'- aCGuGcuGCUGCAgcCUAGCGAgGACGUGg -3'
miRNA:   3'- aGCuCc-CGAUGU--GGUCGCUgUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 41484 0.66 0.976294
Target:  5'- gCGGGGGCcguggaaggaUugACaGGCGuCGGCGUGa -3'
miRNA:   3'- aGCUCCCG----------AugUGgUCGCuGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 93856 0.66 0.976294
Target:  5'- aCGGGGauuGCUAUACCuGUuaGACGGCGUc -3'
miRNA:   3'- aGCUCC---CGAUGUGGuCG--CUGUUGCAc -5'
30165 3' -54.9 NC_006273.1 + 130786 0.66 0.976294
Target:  5'- cUCGcacAGGcGCUGgGCCAGCuGCAuCGUGc -3'
miRNA:   3'- -AGC---UCC-CGAUgUGGUCGcUGUuGCAC- -5'
30165 3' -54.9 NC_006273.1 + 74105 0.66 0.976052
Target:  5'- cCGAGGGCUugAUCuccuCGAUguccuugAGCGUGa -3'
miRNA:   3'- aGCUCCCGAugUGGuc--GCUG-------UUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 138240 0.66 0.973788
Target:  5'- aCGuGGGUUGCACCccCGAUAugGg- -3'
miRNA:   3'- aGCuCCCGAUGUGGucGCUGUugCac -5'
30165 3' -54.9 NC_006273.1 + 37240 0.66 0.973788
Target:  5'- -aGAGgaaGGCgcgACGgCGGCGACGACGa- -3'
miRNA:   3'- agCUC---CCGa--UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 113723 0.66 0.973788
Target:  5'- gCGAGGaCaGCGCCggagguGGCGACGGCGg- -3'
miRNA:   3'- aGCUCCcGaUGUGG------UCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 41175 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGg- -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 41074 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGgUGg -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 1136 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGgUGg -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 1237 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGg- -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 164539 0.66 0.971095
Target:  5'- gUUGAGGGaggGCGgCGGCGGucggcccgcCAGCGUGc -3'
miRNA:   3'- -AGCUCCCga-UGUgGUCGCU---------GUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 153616 0.66 0.96821
Target:  5'- gUCGcGGGUg--GCCGGCGuCAGCGUu -3'
miRNA:   3'- -AGCuCCCGaugUGGUCGCuGUUGCAc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.