miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 3' -54.9 NC_006273.1 + 155493 1.08 0.006929
Target:  5'- cUCGAGGGCUACACCAGCGACAACGUGc -3'
miRNA:   3'- -AGCUCCCGAUGUGGUCGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 179745 0.78 0.453372
Target:  5'- gCGAagaacuGGGCUAUguccgcuucgagACCGGCGGCGACGUGg -3'
miRNA:   3'- aGCU------CCCGAUG------------UGGUCGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 204990 0.78 0.462407
Target:  5'- gUCGAGGGUU-CGCCAGa-GCGACGUGa -3'
miRNA:   3'- -AGCUCCCGAuGUGGUCgcUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 40949 0.78 0.471537
Target:  5'- aCGGGGGUUGCGCCGGgGACGGgGg- -3'
miRNA:   3'- aGCUCCCGAUGUGGUCgCUGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 1011 0.78 0.471537
Target:  5'- aCGGGGGUUGCGCCGGgGACGGgGg- -3'
miRNA:   3'- aGCUCCCGAUGUGGUCgCUGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 114356 0.76 0.537755
Target:  5'- aCGAGGGUgcCGCCcagGGCGACGACGa- -3'
miRNA:   3'- aGCUCCCGauGUGG---UCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 101349 0.73 0.706463
Target:  5'- -gGAGGGCaACACCaaccaGGCGGCGGcCGUGc -3'
miRNA:   3'- agCUCCCGaUGUGG-----UCGCUGUU-GCAC- -5'
30165 3' -54.9 NC_006273.1 + 71533 0.73 0.706463
Target:  5'- aCGAGGGCccuCGCCGGCGGCcGCu-- -3'
miRNA:   3'- aGCUCCCGau-GUGGUCGCUGuUGcac -5'
30165 3' -54.9 NC_006273.1 + 149454 0.73 0.72592
Target:  5'- cCGAGGGCgagguuauuCACCuGCGugGACGg- -3'
miRNA:   3'- aGCUCCCGau-------GUGGuCGCugUUGCac -5'
30165 3' -54.9 NC_006273.1 + 37079 0.73 0.735536
Target:  5'- gCGAGGGCcaGC-CCAGCGACAcgcACGa- -3'
miRNA:   3'- aGCUCCCGa-UGuGGUCGCUGU---UGCac -5'
30165 3' -54.9 NC_006273.1 + 157370 0.72 0.763836
Target:  5'- --uGGGGCUGCgucGCCuGCGACGGCGg- -3'
miRNA:   3'- agcUCCCGAUG---UGGuCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 132265 0.72 0.763836
Target:  5'- cCGuGuGGCUACACgA-CGACGACGUGg -3'
miRNA:   3'- aGCuC-CCGAUGUGgUcGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 79097 0.72 0.773056
Target:  5'- cCGcGGGGUugaUAC-CCAGCGACGGCGUc -3'
miRNA:   3'- aGC-UCCCG---AUGuGGUCGCUGUUGCAc -5'
30165 3' -54.9 NC_006273.1 + 33235 0.72 0.782156
Target:  5'- cCGAGGGCcccGgGgCGGCGACGACGg- -3'
miRNA:   3'- aGCUCCCGa--UgUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 39366 0.72 0.791128
Target:  5'- aCGAGGcggcGCUAC-CCGGCGAgGACGa- -3'
miRNA:   3'- aGCUCC----CGAUGuGGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 92601 0.71 0.799962
Target:  5'- aCGGcGGCUGCuguugcucGCCAGCGGCGcGCGUGc -3'
miRNA:   3'- aGCUcCCGAUG--------UGGUCGCUGU-UGCAC- -5'
30165 3' -54.9 NC_006273.1 + 158853 0.71 0.808651
Target:  5'- cUCGuGcGCcGCGCCgAGCGGCGACGUGc -3'
miRNA:   3'- -AGCuCcCGaUGUGG-UCGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 111908 0.71 0.808651
Target:  5'- cCGAGGGcCUGCGCCAGCu-CAAgGg- -3'
miRNA:   3'- aGCUCCC-GAUGUGGUCGcuGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 182846 0.71 0.817187
Target:  5'- aCGAGcucGGCUGCugCAGC-ACAACGg- -3'
miRNA:   3'- aGCUC---CCGAUGugGUCGcUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 62039 0.71 0.817187
Target:  5'- -aGAGcGGCgGCACCgcGGCGGCGGCGg- -3'
miRNA:   3'- agCUC-CCGaUGUGG--UCGCUGUUGCac -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.