miRNA display CGI


Results 21 - 40 of 104 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 3' -54.9 NC_006273.1 + 172442 0.66 0.96821
Target:  5'- -aGAGGaGCUgGCACCAGCGGuggcCAAaGUGu -3'
miRNA:   3'- agCUCC-CGA-UGUGGUCGCU----GUUgCAC- -5'
30165 3' -54.9 NC_006273.1 + 153616 0.66 0.96821
Target:  5'- gUCGcGGGUg--GCCGGCGuCAGCGUu -3'
miRNA:   3'- -AGCuCCCGaugUGGUCGCuGUUGCAc -5'
30165 3' -54.9 NC_006273.1 + 177339 0.66 0.96791
Target:  5'- ----aGGCgGCACCGGCGAuccaaaaCGACGUGg -3'
miRNA:   3'- agcucCCGaUGUGGUCGCU-------GUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 167302 0.67 0.965125
Target:  5'- gCGAcGGGCacuccggccACAgCGGCGGCAGCGg- -3'
miRNA:   3'- aGCU-CCCGa--------UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 154060 0.67 0.965125
Target:  5'- cCGAuaGGCUGCgugaggucauuGCCAGCGugGGCGa- -3'
miRNA:   3'- aGCUc-CCGAUG-----------UGGUCGCugUUGCac -5'
30165 3' -54.9 NC_006273.1 + 220823 0.67 0.965125
Target:  5'- -gGAGGcGCgauCGCCAGgGACggUGUa -3'
miRNA:   3'- agCUCC-CGau-GUGGUCgCUGuuGCAc -5'
30165 3' -54.9 NC_006273.1 + 211769 0.67 0.965125
Target:  5'- gUGAGcaGGCccggGC-UCGGCGGCGACGUGa -3'
miRNA:   3'- aGCUC--CCGa---UGuGGUCGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 173210 0.67 0.964805
Target:  5'- aCGuAGGGCcGCGCCuccGUGGCAgccguuuccagcuGCGUGa -3'
miRNA:   3'- aGC-UCCCGaUGUGGu--CGCUGU-------------UGCAC- -5'
30165 3' -54.9 NC_006273.1 + 189052 0.67 0.961836
Target:  5'- -nGGGGGCccGgACCGGCGGCGuagGCGg- -3'
miRNA:   3'- agCUCCCGa-UgUGGUCGCUGU---UGCac -5'
30165 3' -54.9 NC_006273.1 + 204166 0.67 0.961836
Target:  5'- cUGAGGGCguUACcCgCAGCGGCAACc-- -3'
miRNA:   3'- aGCUCCCG--AUGuG-GUCGCUGUUGcac -5'
30165 3' -54.9 NC_006273.1 + 145526 0.67 0.961836
Target:  5'- aCGGGGGUUuggacgGCAaaGGUGACGACGg- -3'
miRNA:   3'- aGCUCCCGA------UGUggUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 144121 0.67 0.961836
Target:  5'- aCGAGGGuCUGCGCgacauuuuggguCAGCGGCA-CGc- -3'
miRNA:   3'- aGCUCCC-GAUGUG------------GUCGCUGUuGCac -5'
30165 3' -54.9 NC_006273.1 + 161784 0.67 0.961836
Target:  5'- -aGaAGGGaagGCGgCAGCGGCAGCGg- -3'
miRNA:   3'- agC-UCCCga-UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 197724 0.67 0.958338
Target:  5'- aCGAcGGGCUcucGCGCCGuCaACAGCGUGc -3'
miRNA:   3'- aGCU-CCCGA---UGUGGUcGcUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 1982 0.67 0.958338
Target:  5'- aCGGGGacgacGUcGCGCCAGCGGCgAGCGg- -3'
miRNA:   3'- aGCUCC-----CGaUGUGGUCGCUG-UUGCac -5'
30165 3' -54.9 NC_006273.1 + 79913 0.67 0.958338
Target:  5'- cUCGAGcguguacGuCUGCGCCGGCGACAcauGCGa- -3'
miRNA:   3'- -AGCUCc------C-GAUGUGGUCGCUGU---UGCac -5'
30165 3' -54.9 NC_006273.1 + 30880 0.67 0.956879
Target:  5'- cCGAGGGCgaugaguuuuCCuucuGCGACAGCGa- -3'
miRNA:   3'- aGCUCCCGaugu------GGu---CGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 145173 0.67 0.950696
Target:  5'- cCGAGcuGCUGgGCCGGCu-CAACGUGu -3'
miRNA:   3'- aGCUCc-CGAUgUGGUCGcuGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 44437 0.67 0.950696
Target:  5'- -gGAGGGCaccgUGCcCCgaGGCGGCGACGg- -3'
miRNA:   3'- agCUCCCG----AUGuGG--UCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 133221 0.67 0.948233
Target:  5'- cCGAGGuGCU-CGCCuaucaccuguacgguGGCGACGGCGc- -3'
miRNA:   3'- aGCUCC-CGAuGUGG---------------UCGCUGUUGCac -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.