miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 3' -54.9 NC_006273.1 + 1011 0.78 0.471537
Target:  5'- aCGGGGGUUGCGCCGGgGACGGgGg- -3'
miRNA:   3'- aGCUCCCGAUGUGGUCgCUGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 1025 0.68 0.922403
Target:  5'- gCGAGuGCUGCGCCuacGGCGACGcCGg- -3'
miRNA:   3'- aGCUCcCGAUGUGG---UCGCUGUuGCac -5'
30165 3' -54.9 NC_006273.1 + 1136 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGgUGg -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 1237 0.66 0.971095
Target:  5'- aCGGGGGaCUcUugCGGCGGgGACGg- -3'
miRNA:   3'- aGCUCCC-GAuGugGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 1732 0.71 0.833767
Target:  5'- aCGGGaGCUGCGCCGGCGgugggccggcACGACGgUGg -3'
miRNA:   3'- aGCUCcCGAUGUGGUCGC----------UGUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 1982 0.67 0.958338
Target:  5'- aCGGGGacgacGUcGCGCCAGCGGCgAGCGg- -3'
miRNA:   3'- aGCUCC-----CGaUGUGGUCGCUG-UUGCac -5'
30165 3' -54.9 NC_006273.1 + 2155 0.71 0.825561
Target:  5'- gUCG-GGGCggacgcgACGgCGGCGGCAGCGg- -3'
miRNA:   3'- -AGCuCCCGa------UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 7856 0.67 0.946546
Target:  5'- gCGuGGGUaccguCACUAGUGACGugGCGUGa -3'
miRNA:   3'- aGCuCCCGau---GUGGUCGCUGU--UGCAC- -5'
30165 3' -54.9 NC_006273.1 + 14924 0.66 0.97862
Target:  5'- cUGAGGGCUcguACGCCA-CGGCcgAACGa- -3'
miRNA:   3'- aGCUCCCGA---UGUGGUcGCUG--UUGCac -5'
30165 3' -54.9 NC_006273.1 + 15654 0.68 0.937572
Target:  5'- aCGGGcccgcGGCUGCACUgccuGGUGACGACGc- -3'
miRNA:   3'- aGCUC-----CCGAUGUGG----UCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 18628 0.7 0.86477
Target:  5'- cUCGuGGGCUauuaccuggcauACGggccuuuugugcCCAGCGGCAugGUGc -3'
miRNA:   3'- -AGCuCCCGA------------UGU------------GGUCGCUGUugCAC- -5'
30165 3' -54.9 NC_006273.1 + 27405 0.7 0.849647
Target:  5'- --cAGGGCgaaagGCACCc-CGACGACGUGg -3'
miRNA:   3'- agcUCCCGa----UGUGGucGCUGUUGCAC- -5'
30165 3' -54.9 NC_006273.1 + 30685 0.71 0.841798
Target:  5'- cUCG-GGGCU-CGCCGGCGACAc---- -3'
miRNA:   3'- -AGCuCCCGAuGUGGUCGCUGUugcac -5'
30165 3' -54.9 NC_006273.1 + 30880 0.67 0.956879
Target:  5'- cCGAGGGCgaugaguuuuCCuucuGCGACAGCGa- -3'
miRNA:   3'- aGCUCCCGaugu------GGu---CGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 33235 0.72 0.782156
Target:  5'- cCGAGGGCcccGgGgCGGCGACGACGg- -3'
miRNA:   3'- aGCUCCCGa--UgUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 33277 0.66 0.976294
Target:  5'- gCG-GGGCc-UugCGGCGGCAGCGg- -3'
miRNA:   3'- aGCuCCCGauGugGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 37079 0.73 0.735536
Target:  5'- gCGAGGGCcaGC-CCAGCGACAcgcACGa- -3'
miRNA:   3'- aGCUCCCGa-UGuGGUCGCUGU---UGCac -5'
30165 3' -54.9 NC_006273.1 + 37240 0.66 0.973788
Target:  5'- -aGAGgaaGGCgcgACGgCGGCGACGACGa- -3'
miRNA:   3'- agCUC---CCGa--UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 39366 0.72 0.791128
Target:  5'- aCGAGGcggcGCUAC-CCGGCGAgGACGa- -3'
miRNA:   3'- aGCUCC----CGAUGuGGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 40324 0.69 0.911147
Target:  5'- aCGGGGGaacCUACGgCGGCGauccccgucgaGCGGCGUGa -3'
miRNA:   3'- aGCUCCC---GAUGUgGUCGC-----------UGUUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.