miRNA display CGI


Results 1 - 20 of 104 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 3' -54.9 NC_006273.1 + 144514 0.69 0.898987
Target:  5'- aCGAGGGCUuagucaaaACGCUGGUGGaauguuACGUGa -3'
miRNA:   3'- aGCUCCCGA--------UGUGGUCGCUgu----UGCAC- -5'
30165 3' -54.9 NC_006273.1 + 154632 0.7 0.849647
Target:  5'- ---cGGGa-GCACCGGCGGCAACGa- -3'
miRNA:   3'- agcuCCCgaUGUGGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 140776 0.7 0.857306
Target:  5'- ---cGGGUcgaugACGCCGGCGACGAgGUGc -3'
miRNA:   3'- agcuCCCGa----UGUGGUCGCUGUUgCAC- -5'
30165 3' -54.9 NC_006273.1 + 145077 0.7 0.857306
Target:  5'- cCGcGGGCgACGCCgcuGGCGGCGGCGcUGa -3'
miRNA:   3'- aGCuCCCGaUGUGG---UCGCUGUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 113558 0.7 0.86477
Target:  5'- aCGGGGGacgGCACgGGCGGguACGUa -3'
miRNA:   3'- aGCUCCCga-UGUGgUCGCUguUGCAc -5'
30165 3' -54.9 NC_006273.1 + 189021 0.7 0.872034
Target:  5'- gUCGGGGGCcugUGCGacgaCAGCcGCGugGUGg -3'
miRNA:   3'- -AGCUCCCG---AUGUg---GUCGcUGUugCAC- -5'
30165 3' -54.9 NC_006273.1 + 116957 0.7 0.879093
Target:  5'- gUGAcGGGCUACguGCaCAGUGGCAGCGcUGc -3'
miRNA:   3'- aGCU-CCCGAUG--UG-GUCGCUGUUGC-AC- -5'
30165 3' -54.9 NC_006273.1 + 120308 0.69 0.88594
Target:  5'- aCGAGGGUcccuCACCGgGCGAgGACGa- -3'
miRNA:   3'- aGCUCCCGau--GUGGU-CGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 142062 0.69 0.892573
Target:  5'- cUCGcGGcaGCgcCGCCAGCGGCGACGg- -3'
miRNA:   3'- -AGCuCC--CGauGUGGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 154551 0.7 0.849647
Target:  5'- -gGAGGcGCUGCGCCccGCGGcCGACGUc -3'
miRNA:   3'- agCUCC-CGAUGUGGu-CGCU-GUUGCAc -5'
30165 3' -54.9 NC_006273.1 + 30685 0.71 0.841798
Target:  5'- cUCG-GGGCU-CGCCGGCGACAc---- -3'
miRNA:   3'- -AGCuCCCGAuGUGGUCGCUGUugcac -5'
30165 3' -54.9 NC_006273.1 + 177499 0.71 0.833767
Target:  5'- cUCGAggcuccGGGCgugugGCGCCAGCGAacCGGCGg- -3'
miRNA:   3'- -AGCU------CCCGa----UGUGGUCGCU--GUUGCac -5'
30165 3' -54.9 NC_006273.1 + 1011 0.78 0.471537
Target:  5'- aCGGGGGUUGCGCCGGgGACGGgGg- -3'
miRNA:   3'- aGCUCCCGAUGUGGUCgCUGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 37079 0.73 0.735536
Target:  5'- gCGAGGGCcaGC-CCAGCGACAcgcACGa- -3'
miRNA:   3'- aGCUCCCGa-UGuGGUCGCUGU---UGCac -5'
30165 3' -54.9 NC_006273.1 + 33235 0.72 0.782156
Target:  5'- cCGAGGGCcccGgGgCGGCGACGACGg- -3'
miRNA:   3'- aGCUCCCGa--UgUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 39366 0.72 0.791128
Target:  5'- aCGAGGcggcGCUAC-CCGGCGAgGACGa- -3'
miRNA:   3'- aGCUCC----CGAUGuGGUCGCUgUUGCac -5'
30165 3' -54.9 NC_006273.1 + 111908 0.71 0.808651
Target:  5'- cCGAGGGcCUGCGCCAGCu-CAAgGg- -3'
miRNA:   3'- aGCUCCC-GAUGUGGUCGcuGUUgCac -5'
30165 3' -54.9 NC_006273.1 + 62039 0.71 0.817187
Target:  5'- -aGAGcGGCgGCACCgcGGCGGCGGCGg- -3'
miRNA:   3'- agCUC-CCGaUGUGG--UCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 197048 0.71 0.825561
Target:  5'- gUCG-GGGCggacgcgACGgCGGCGGCAGCGg- -3'
miRNA:   3'- -AGCuCCCGa------UGUgGUCGCUGUUGCac -5'
30165 3' -54.9 NC_006273.1 + 196624 0.71 0.833767
Target:  5'- aCGGGaGCUGCGCCGGCGgugggccggcACGACGgUGg -3'
miRNA:   3'- aGCUCcCGAUGUGGUCGC----------UGUUGC-AC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.