miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 93050 0.66 0.908461
Target:  5'- cCCUAGgua-CGCCACCuuAUCUACCa -3'
miRNA:   3'- -GGGUCacugGCGGUGGcgUAGGUGGg -5'
30165 5' -59 NC_006273.1 + 162927 0.66 0.908461
Target:  5'- ---cGUGGCCGCCggcACCGaCGgugcguuacuUCUACCCa -3'
miRNA:   3'- ggguCACUGGCGG---UGGC-GU----------AGGUGGG- -5'
30165 5' -59 NC_006273.1 + 206783 0.66 0.908461
Target:  5'- uCCCAGaGGa-GCUGCCGCAcaCCGCCUc -3'
miRNA:   3'- -GGGUCaCUggCGGUGGCGUa-GGUGGG- -5'
30165 5' -59 NC_006273.1 + 98739 0.66 0.908461
Target:  5'- aCCCGcGUGAuagaugaauuccUCGUCGCCGCGcaacaaacgcgCUACCCg -3'
miRNA:   3'- -GGGU-CACU------------GGCGGUGGCGUa----------GGUGGG- -5'
30165 5' -59 NC_006273.1 + 191944 0.66 0.908461
Target:  5'- cCCgGGUGAaaaccgcguauCCGCCuCCGCuauuaaaCUACCCc -3'
miRNA:   3'- -GGgUCACU-----------GGCGGuGGCGua-----GGUGGG- -5'
30165 5' -59 NC_006273.1 + 75484 0.66 0.908461
Target:  5'- aCgCAG-GAcCCGCCGgCGCuucggCCGCCUg -3'
miRNA:   3'- -GgGUCaCU-GGCGGUgGCGua---GGUGGG- -5'
30165 5' -59 NC_006273.1 + 233763 0.66 0.902628
Target:  5'- gCCCAGccGGuuGCagcgguacaGCCGCA-CCACCUc -3'
miRNA:   3'- -GGGUCa-CUggCGg--------UGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 179252 0.66 0.902628
Target:  5'- gUCGGUcGCCGCCuCCGCG---GCCCg -3'
miRNA:   3'- gGGUCAcUGGCGGuGGCGUaggUGGG- -5'
30165 5' -59 NC_006273.1 + 38871 0.66 0.902628
Target:  5'- gCCCAGccGGuuGCagcgguacaGCCGCA-CCACCUc -3'
miRNA:   3'- -GGGUCa-CUggCGg--------UGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 123155 0.66 0.902033
Target:  5'- gCCAGcccCCGCCgcgcauugccaccGCCGCGUCC-UCCa -3'
miRNA:   3'- gGGUCacuGGCGG-------------UGGCGUAGGuGGG- -5'
30165 5' -59 NC_006273.1 + 94209 0.66 0.902033
Target:  5'- aCCCGgcGUGcCCGCCGCCccccggcGCAgUCCGCg- -3'
miRNA:   3'- -GGGU--CACuGGCGGUGG-------CGU-AGGUGgg -5'
30165 5' -59 NC_006273.1 + 146048 0.66 0.899029
Target:  5'- aCCCAGgacuCCGCgccaaaagaagauuuCACaaCGUCCACCCa -3'
miRNA:   3'- -GGGUCacu-GGCG---------------GUGgcGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 106924 0.66 0.896589
Target:  5'- gCUCAucUGACUucggGCCaACCGCAUuuGCCCa -3'
miRNA:   3'- -GGGUc-ACUGG----CGG-UGGCGUAggUGGG- -5'
30165 5' -59 NC_006273.1 + 3014 0.66 0.896589
Target:  5'- cCCCAagGGCUGCCGcCCGCAgacuUUUACUCa -3'
miRNA:   3'- -GGGUcaCUGGCGGU-GGCGU----AGGUGGG- -5'
30165 5' -59 NC_006273.1 + 16766 0.66 0.896589
Target:  5'- aCCuG-GACCGCuCGCCGCcccugcagcGUCUAgCCg -3'
miRNA:   3'- gGGuCaCUGGCG-GUGGCG---------UAGGUgGG- -5'
30165 5' -59 NC_006273.1 + 97476 0.66 0.896589
Target:  5'- cCUCGGUagcGACCucucaCCAUCGUuugcccGUCCGCCCg -3'
miRNA:   3'- -GGGUCA---CUGGc----GGUGGCG------UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 179598 0.66 0.896589
Target:  5'- gCCAucGGCCGcCCACCGC---UACCCg -3'
miRNA:   3'- gGGUcaCUGGC-GGUGGCGuagGUGGG- -5'
30165 5' -59 NC_006273.1 + 137178 0.66 0.890345
Target:  5'- gCCGGgguGCCGCCGCUGCcgCUcagcgaGCUCg -3'
miRNA:   3'- gGGUCac-UGGCGGUGGCGuaGG------UGGG- -5'
30165 5' -59 NC_006273.1 + 67949 0.66 0.890345
Target:  5'- aCCGuacUGACCGCCGagagCGCGcCCGCCa -3'
miRNA:   3'- gGGUc--ACUGGCGGUg---GCGUaGGUGGg -5'
30165 5' -59 NC_006273.1 + 159119 0.66 0.890345
Target:  5'- cCCCgcuGGUGccACCGCCGuuGUGaCgGCCCg -3'
miRNA:   3'- -GGG---UCAC--UGGCGGUggCGUaGgUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.