miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 56839 0.66 0.890345
Target:  5'- gCCAGcgaagagaGGCUGCCgcuaccACCGCcgCCGCCa -3'
miRNA:   3'- gGGUCa-------CUGGCGG------UGGCGuaGGUGGg -5'
30165 5' -59 NC_006273.1 + 75484 0.66 0.908461
Target:  5'- aCgCAG-GAcCCGCCGgCGCuucggCCGCCUg -3'
miRNA:   3'- -GgGUCaCU-GGCGGUgGCGua---GGUGGG- -5'
30165 5' -59 NC_006273.1 + 127986 0.66 0.890345
Target:  5'- -gCGGUauGCgGCgCGCCGCA-CCGCCCa -3'
miRNA:   3'- ggGUCAc-UGgCG-GUGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 145125 0.66 0.883901
Target:  5'- gCCCGGgcGAuUCGCCGCCGCcgaUACCUu -3'
miRNA:   3'- -GGGUCa-CU-GGCGGUGGCGuagGUGGG- -5'
30165 5' -59 NC_006273.1 + 118308 0.66 0.883901
Target:  5'- gCCAGUuGCCGCCucgcuACCGCGUCgGguUCUg -3'
miRNA:   3'- gGGUCAcUGGCGG-----UGGCGUAGgU--GGG- -5'
30165 5' -59 NC_006273.1 + 112461 0.66 0.877259
Target:  5'- cCCCAGgGACCGgCGUgGCAggagcuUCCGCCg -3'
miRNA:   3'- -GGGUCaCUGGCgGUGgCGU------AGGUGGg -5'
30165 5' -59 NC_006273.1 + 233171 0.66 0.877259
Target:  5'- gCCGGac-CCGCCAUCGCcgUCggACCCa -3'
miRNA:   3'- gGGUCacuGGCGGUGGCGuaGG--UGGG- -5'
30165 5' -59 NC_006273.1 + 191797 0.66 0.890345
Target:  5'- aCCCGGacACgCGCCGCgGCA-CUugCCu -3'
miRNA:   3'- -GGGUCacUG-GCGGUGgCGUaGGugGG- -5'
30165 5' -59 NC_006273.1 + 131270 0.66 0.883901
Target:  5'- uCUCGGcGugCGCgCGCCGCggCUuCCCa -3'
miRNA:   3'- -GGGUCaCugGCG-GUGGCGuaGGuGGG- -5'
30165 5' -59 NC_006273.1 + 129930 0.66 0.883901
Target:  5'- aUCC-GUGACCGCCgggcGCgCGCuGUCCuACCa -3'
miRNA:   3'- -GGGuCACUGGCGG----UG-GCG-UAGG-UGGg -5'
30165 5' -59 NC_006273.1 + 94209 0.66 0.902033
Target:  5'- aCCCGgcGUGcCCGCCGCCccccggcGCAgUCCGCg- -3'
miRNA:   3'- -GGGU--CACuGGCGGUGG-------CGU-AGGUGgg -5'
30165 5' -59 NC_006273.1 + 19903 0.66 0.883901
Target:  5'- cUuuGGUcugGAUCGCUcCCGCAUuuGCCCg -3'
miRNA:   3'- -GggUCA---CUGGCGGuGGCGUAggUGGG- -5'
30165 5' -59 NC_006273.1 + 137178 0.66 0.890345
Target:  5'- gCCGGgguGCCGCCGCUGCcgCUcagcgaGCUCg -3'
miRNA:   3'- gGGUCac-UGGCGGUGGCGuaGG------UGGG- -5'
30165 5' -59 NC_006273.1 + 162927 0.66 0.908461
Target:  5'- ---cGUGGCCGCCggcACCGaCGgugcguuacuUCUACCCa -3'
miRNA:   3'- ggguCACUGGCGG---UGGC-GU----------AGGUGGG- -5'
30165 5' -59 NC_006273.1 + 233763 0.66 0.902628
Target:  5'- gCCCAGccGGuuGCagcgguacaGCCGCA-CCACCUc -3'
miRNA:   3'- -GGGUCa-CUggCGg--------UGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 146048 0.66 0.899029
Target:  5'- aCCCAGgacuCCGCgccaaaagaagauuuCACaaCGUCCACCCa -3'
miRNA:   3'- -GGGUCacu-GGCG---------------GUGgcGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 56200 0.66 0.877259
Target:  5'- gCCAGUcaagaaagcuaaGGCUGgCGCUGCG-CCGCCUa -3'
miRNA:   3'- gGGUCA------------CUGGCgGUGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 206783 0.66 0.908461
Target:  5'- uCCCAGaGGa-GCUGCCGCAcaCCGCCUc -3'
miRNA:   3'- -GGGUCaCUggCGGUGGCGUa-GGUGGG- -5'
30165 5' -59 NC_006273.1 + 234340 0.66 0.877259
Target:  5'- aCCCGGUGgacGCCGUgGCCcgGCGU-CGCCg -3'
miRNA:   3'- -GGGUCAC---UGGCGgUGG--CGUAgGUGGg -5'
30165 5' -59 NC_006273.1 + 97476 0.66 0.896589
Target:  5'- cCUCGGUagcGACCucucaCCAUCGUuugcccGUCCGCCCg -3'
miRNA:   3'- -GGGUCA---CUGGc----GGUGGCG------UAGGUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.