miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 155528 1.12 0.001883
Target:  5'- gCCCAGUGACCGCCACCGCAUCCACCCc -3'
miRNA:   3'- -GGGUCACUGGCGGUGGCGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 101898 0.81 0.202854
Target:  5'- gCCCGG--GCCGCCGCCaGCGUCCGCgCCu -3'
miRNA:   3'- -GGGUCacUGGCGGUGG-CGUAGGUG-GG- -5'
30165 5' -59 NC_006273.1 + 68063 0.79 0.266834
Target:  5'- gCCGccGUGGCCGCCGCUGCcgCCGCUg -3'
miRNA:   3'- gGGU--CACUGGCGGUGGCGuaGGUGGg -5'
30165 5' -59 NC_006273.1 + 161645 0.78 0.291526
Target:  5'- gCCGGgccuCgGCCGCCGCcgCCACCCa -3'
miRNA:   3'- gGGUCacu-GgCGGUGGCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 83383 0.78 0.297973
Target:  5'- gCCAcGUcgGGCUGCUGCCGCcgCCACCCg -3'
miRNA:   3'- gGGU-CA--CUGGCGGUGGCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 194435 0.78 0.300582
Target:  5'- aCCGGUGcugggcaagcgagucGCgaCGCCGCaCGCGUCCGCCCg -3'
miRNA:   3'- gGGUCAC---------------UG--GCGGUG-GCGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 187906 0.78 0.304528
Target:  5'- -gCGGcuugGACCGCCacauguACCGCAUCCAUCCa -3'
miRNA:   3'- ggGUCa---CUGGCGG------UGGCGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 135535 0.77 0.317971
Target:  5'- cUCCAaUGAUCGCCGCCGCcgcuccucCCGCCCa -3'
miRNA:   3'- -GGGUcACUGGCGGUGGCGua------GGUGGG- -5'
30165 5' -59 NC_006273.1 + 233225 0.77 0.324858
Target:  5'- gCCGcUG-CCGCCGCCGUcgcGUCCGCCCc -3'
miRNA:   3'- gGGUcACuGGCGGUGGCG---UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 38332 0.77 0.324858
Target:  5'- gCCGcUG-CCGCCGCCGUcgcGUCCGCCCc -3'
miRNA:   3'- gGGUcACuGGCGGUGGCG---UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 2067 0.77 0.353507
Target:  5'- cCCCAGcccACCacauCCACCGCAUCgCACCCa -3'
miRNA:   3'- -GGGUCac-UGGc---GGUGGCGUAG-GUGGG- -5'
30165 5' -59 NC_006273.1 + 56718 0.77 0.353507
Target:  5'- aCCgCGGUcGugcuucuuGCCGCCACCGCcgCCACCUc -3'
miRNA:   3'- -GG-GUCA-C--------UGGCGGUGGCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 72307 0.76 0.383895
Target:  5'- cCCCGca-GCCGCCGCCGUcgCCGCCg -3'
miRNA:   3'- -GGGUcacUGGCGGUGGCGuaGGUGGg -5'
30165 5' -59 NC_006273.1 + 213241 0.76 0.383895
Target:  5'- cCUCAGaGACgGCCGCCGCcgCUACCg -3'
miRNA:   3'- -GGGUCaCUGgCGGUGGCGuaGGUGGg -5'
30165 5' -59 NC_006273.1 + 94595 0.76 0.383895
Target:  5'- uCCCGGcGACCuCCGCCgGCuucccgGUCCACCCg -3'
miRNA:   3'- -GGGUCaCUGGcGGUGG-CG------UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 71846 0.76 0.383895
Target:  5'- aCgCGG-GACCGCaCGCCGCGUaCCACCa -3'
miRNA:   3'- -GgGUCaCUGGCG-GUGGCGUA-GGUGGg -5'
30165 5' -59 NC_006273.1 + 70424 0.76 0.391759
Target:  5'- aCCAGcugGAcCCGCCGCUGCuacgCCACCUa -3'
miRNA:   3'- gGGUCa--CU-GGCGGUGGCGua--GGUGGG- -5'
30165 5' -59 NC_006273.1 + 166602 0.75 0.407796
Target:  5'- uUCCAGUcGCUGCCagACCGCuUCCACCg -3'
miRNA:   3'- -GGGUCAcUGGCGG--UGGCGuAGGUGGg -5'
30165 5' -59 NC_006273.1 + 171123 0.75 0.432607
Target:  5'- aUCCGcuucGGCCGCCGCCGCAa-CGCCCg -3'
miRNA:   3'- -GGGUca--CUGGCGGUGGCGUagGUGGG- -5'
30165 5' -59 NC_006273.1 + 133307 0.75 0.44107
Target:  5'- aCCCGcguGUGGCCGCCGCUGCucgagCACCUc -3'
miRNA:   3'- -GGGU---CACUGGCGGUGGCGuag--GUGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.