miRNA display CGI


Results 21 - 40 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 137178 0.66 0.890345
Target:  5'- gCCGGgguGCCGCCGCUGCcgCUcagcgaGCUCg -3'
miRNA:   3'- gGGUCac-UGGCGGUGGCGuaGG------UGGG- -5'
30165 5' -59 NC_006273.1 + 127986 0.66 0.890345
Target:  5'- -gCGGUauGCgGCgCGCCGCA-CCGCCCa -3'
miRNA:   3'- ggGUCAc-UGgCG-GUGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 159119 0.66 0.890345
Target:  5'- cCCCgcuGGUGccACCGCCGuuGUGaCgGCCCg -3'
miRNA:   3'- -GGG---UCAC--UGGCGGUggCGUaGgUGGG- -5'
30165 5' -59 NC_006273.1 + 180179 0.66 0.890345
Target:  5'- aCCCAcccugaaagcGUGGcacCCGCuUACCGCG-CCACCg -3'
miRNA:   3'- -GGGU----------CACU---GGCG-GUGGCGUaGGUGGg -5'
30165 5' -59 NC_006273.1 + 67949 0.66 0.890345
Target:  5'- aCCGuacUGACCGCCGagagCGCGcCCGCCa -3'
miRNA:   3'- gGGUc--ACUGGCGGUg---GCGUaGGUGGg -5'
30165 5' -59 NC_006273.1 + 19969 0.66 0.890345
Target:  5'- aCCAgcGUGGCUGUCACgGCGUCaggcuUCCa -3'
miRNA:   3'- gGGU--CACUGGCGGUGgCGUAGgu---GGG- -5'
30165 5' -59 NC_006273.1 + 169545 0.66 0.890345
Target:  5'- gCCCAGauagGcgcguACCGCCuGCUGCG-CCGCCg -3'
miRNA:   3'- -GGGUCa---C-----UGGCGG-UGGCGUaGGUGGg -5'
30165 5' -59 NC_006273.1 + 19903 0.66 0.883901
Target:  5'- cUuuGGUcugGAUCGCUcCCGCAUuuGCCCg -3'
miRNA:   3'- -GggUCA---CUGGCGGuGGCGUAggUGGG- -5'
30165 5' -59 NC_006273.1 + 156875 0.66 0.883901
Target:  5'- gCCCGGUGuCCGggcggCGCCGCAggguUCC-UCCg -3'
miRNA:   3'- -GGGUCACuGGCg----GUGGCGU----AGGuGGG- -5'
30165 5' -59 NC_006273.1 + 132107 0.66 0.883901
Target:  5'- gCUGGagcGACCGCUGCC-CGUCUACCg -3'
miRNA:   3'- gGGUCa--CUGGCGGUGGcGUAGGUGGg -5'
30165 5' -59 NC_006273.1 + 22804 0.66 0.883901
Target:  5'- uCCUgguGGUGACCGCCGCU---UCgGCCg -3'
miRNA:   3'- -GGG---UCACUGGCGGUGGcguAGgUGGg -5'
30165 5' -59 NC_006273.1 + 83110 0.66 0.883901
Target:  5'- --uGGUGACCGCCAgCCGCcacgaGCUCa -3'
miRNA:   3'- gggUCACUGGCGGU-GGCGuagg-UGGG- -5'
30165 5' -59 NC_006273.1 + 189531 0.66 0.883901
Target:  5'- uUCCAG-GGCCGCCgacACCGaGUCCGuaugaCCg -3'
miRNA:   3'- -GGGUCaCUGGCGG---UGGCgUAGGUg----GG- -5'
30165 5' -59 NC_006273.1 + 145125 0.66 0.883901
Target:  5'- gCCCGGgcGAuUCGCCGCCGCcgaUACCUu -3'
miRNA:   3'- -GGGUCa-CU-GGCGGUGGCGuagGUGGG- -5'
30165 5' -59 NC_006273.1 + 129930 0.66 0.883901
Target:  5'- aUCC-GUGACCGCCgggcGCgCGCuGUCCuACCa -3'
miRNA:   3'- -GGGuCACUGGCGG----UG-GCG-UAGG-UGGg -5'
30165 5' -59 NC_006273.1 + 118308 0.66 0.883901
Target:  5'- gCCAGUuGCCGCCucgcuACCGCGUCgGguUCUg -3'
miRNA:   3'- gGGUCAcUGGCGG-----UGGCGUAGgU--GGG- -5'
30165 5' -59 NC_006273.1 + 131270 0.66 0.883901
Target:  5'- uCUCGGcGugCGCgCGCCGCggCUuCCCa -3'
miRNA:   3'- -GGGUCaCugGCG-GUGGCGuaGGuGGG- -5'
30165 5' -59 NC_006273.1 + 56200 0.66 0.877259
Target:  5'- gCCAGUcaagaaagcuaaGGCUGgCGCUGCG-CCGCCUa -3'
miRNA:   3'- gGGUCA------------CUGGCgGUGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 112461 0.66 0.877259
Target:  5'- cCCCAGgGACCGgCGUgGCAggagcuUCCGCCg -3'
miRNA:   3'- -GGGUCaCUGGCgGUGgCGU------AGGUGGg -5'
30165 5' -59 NC_006273.1 + 234340 0.66 0.877259
Target:  5'- aCCCGGUGgacGCCGUgGCCcgGCGU-CGCCg -3'
miRNA:   3'- -GGGUCAC---UGGCGgUGG--CGUAgGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.