miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 891 0.68 0.792552
Target:  5'- gCCCAGcgcaacGGCaUGUCGCCGCGccccCCGCCCc -3'
miRNA:   3'- -GGGUCa-----CUG-GCGGUGGCGUa---GGUGGG- -5'
30165 5' -59 NC_006273.1 + 1040 0.68 0.825614
Target:  5'- -aCGGcGACgccggGCCACgGCGUCCACCg -3'
miRNA:   3'- ggGUCaCUGg----CGGUGgCGUAGGUGGg -5'
30165 5' -59 NC_006273.1 + 2067 0.77 0.353507
Target:  5'- cCCCAGcccACCacauCCACCGCAUCgCACCCa -3'
miRNA:   3'- -GGGUCac-UGGc---GGUGGCGUAG-GUGGG- -5'
30165 5' -59 NC_006273.1 + 2410 0.68 0.783949
Target:  5'- cCUCAGgaauCCGUCcCCaCGUCCACCCa -3'
miRNA:   3'- -GGGUCacu-GGCGGuGGcGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 3014 0.66 0.896589
Target:  5'- cCCCAagGGCUGCCGcCCGCAgacuUUUACUCa -3'
miRNA:   3'- -GGGUcaCUGGCGGU-GGCGU----AGGUGGG- -5'
30165 5' -59 NC_006273.1 + 5808 0.73 0.511902
Target:  5'- gUCCAGUGACCGguaACCaCGUCCAgCCCc -3'
miRNA:   3'- -GGGUCACUGGCgg-UGGcGUAGGU-GGG- -5'
30165 5' -59 NC_006273.1 + 5827 0.66 0.877259
Target:  5'- -aCGGUGuaACCGCCGCaucuGUcgCCGCCa -3'
miRNA:   3'- ggGUCAC--UGGCGGUGg---CGuaGGUGGg -5'
30165 5' -59 NC_006273.1 + 6445 0.67 0.863399
Target:  5'- aCCCGG-GcCUGCCACUGgA-CCGCCa -3'
miRNA:   3'- -GGGUCaCuGGCGGUGGCgUaGGUGGg -5'
30165 5' -59 NC_006273.1 + 13587 0.68 0.809368
Target:  5'- gCCGGgcggcccgGGCCGCCguGCUGgAgggCCGCCCc -3'
miRNA:   3'- gGGUCa-------CUGGCGG--UGGCgUa--GGUGGG- -5'
30165 5' -59 NC_006273.1 + 16766 0.66 0.896589
Target:  5'- aCCuG-GACCGCuCGCCGCcccugcagcGUCUAgCCg -3'
miRNA:   3'- gGGuCaCUGGCG-GUGGCG---------UAGGUgGG- -5'
30165 5' -59 NC_006273.1 + 17183 0.74 0.502773
Target:  5'- gCCGGUcGuCCGCCGuCgGCcgCCGCCCa -3'
miRNA:   3'- gGGUCA-CuGGCGGU-GgCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 18125 0.68 0.783949
Target:  5'- cCCUGGaaGCCGUCgguguacuaGCCGUacGUCCACCCg -3'
miRNA:   3'- -GGGUCacUGGCGG---------UGGCG--UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 18458 0.67 0.870424
Target:  5'- aCCUGGUcauCCGCaCGCCGgGUCgCACCg -3'
miRNA:   3'- -GGGUCAcu-GGCG-GUGGCgUAG-GUGGg -5'
30165 5' -59 NC_006273.1 + 19903 0.66 0.883901
Target:  5'- cUuuGGUcugGAUCGCUcCCGCAUuuGCCCg -3'
miRNA:   3'- -GggUCA---CUGGCGGuGGCGUAggUGGG- -5'
30165 5' -59 NC_006273.1 + 19969 0.66 0.890345
Target:  5'- aCCAgcGUGGCUGUCACgGCGUCaggcuUCCa -3'
miRNA:   3'- gGGU--CACUGGCGGUGgCGUAGgu---GGG- -5'
30165 5' -59 NC_006273.1 + 20918 0.67 0.859095
Target:  5'- aCCguGUGaAUCGCCGCCaaugacgacaaauacGCugaccgggccuGUCCGCCCc -3'
miRNA:   3'- -GGguCAC-UGGCGGUGG---------------CG-----------UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 21228 0.71 0.654283
Target:  5'- gCCGcuGUGGCUGCCGCUGCugaUCGCCUg -3'
miRNA:   3'- gGGU--CACUGGCGGUGGCGua-GGUGGG- -5'
30165 5' -59 NC_006273.1 + 21318 0.67 0.863399
Target:  5'- gCCGGUgcgcGACCGCaACCGCGagCggaACCCg -3'
miRNA:   3'- gGGUCA----CUGGCGgUGGCGUagG---UGGG- -5'
30165 5' -59 NC_006273.1 + 21449 0.72 0.596575
Target:  5'- uUCCAGcuuACCGCCACCGUcgCC-CUCa -3'
miRNA:   3'- -GGGUCac-UGGCGGUGGCGuaGGuGGG- -5'
30165 5' -59 NC_006273.1 + 22804 0.66 0.883901
Target:  5'- uCCUgguGGUGACCGCCGCU---UCgGCCg -3'
miRNA:   3'- -GGG---UCACUGGCGGUGGcguAGgUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.