miRNA display CGI


Results 1 - 20 of 266 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30165 5' -59 NC_006273.1 + 132497 0.72 0.615785
Target:  5'- gCCguGUGuuACCGCCGCCGCccgaCGCCg -3'
miRNA:   3'- -GGguCAC--UGGCGGUGGCGuag-GUGGg -5'
30165 5' -59 NC_006273.1 + 82479 0.73 0.558478
Target:  5'- gCCUuc-GACCacggagGCCACCGCG-CCACCCa -3'
miRNA:   3'- -GGGucaCUGG------CGGUGGCGUaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 129524 0.73 0.558478
Target:  5'- aCCCGGagaaUGGCCGgCGCUGCG-CCGCgCCg -3'
miRNA:   3'- -GGGUC----ACUGGCgGUGGCGUaGGUG-GG- -5'
30165 5' -59 NC_006273.1 + 162200 0.72 0.567948
Target:  5'- -gCGGUGGuuGCggCGCCGCGUCUACCg -3'
miRNA:   3'- ggGUCACUggCG--GUGGCGUAGGUGGg -5'
30165 5' -59 NC_006273.1 + 146507 0.72 0.567948
Target:  5'- gCCUGGUacuugacacuGCCGCUACCGCGUCCGCg- -3'
miRNA:   3'- -GGGUCAc---------UGGCGGUGGCGUAGGUGgg -5'
30165 5' -59 NC_006273.1 + 145783 0.72 0.577458
Target:  5'- -aCAGUaguagcGGCaGCCACCGCGaggCCACCCa -3'
miRNA:   3'- ggGUCA------CUGgCGGUGGCGUa--GGUGGG- -5'
30165 5' -59 NC_006273.1 + 75108 0.72 0.577458
Target:  5'- aCCAGcu-CCGUCGCCGCcgCUACCUu -3'
miRNA:   3'- gGGUCacuGGCGGUGGCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 23352 0.72 0.606171
Target:  5'- cCCCAGcGACUGUgucagcggCugCGCAUUCGCCUg -3'
miRNA:   3'- -GGGUCaCUGGCG--------GugGCGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 60223 0.72 0.615785
Target:  5'- gCUCA--GACCGCUACucaCGCGUCCACCg -3'
miRNA:   3'- -GGGUcaCUGGCGGUG---GCGUAGGUGGg -5'
30165 5' -59 NC_006273.1 + 5808 0.73 0.511902
Target:  5'- gUCCAGUGACCGguaACCaCGUCCAgCCCc -3'
miRNA:   3'- -GGGUCACUGGCgg-UGGcGUAGGU-GGG- -5'
30165 5' -59 NC_006273.1 + 56567 0.74 0.502773
Target:  5'- cUCCucc-GCCGCCGCCGCccgAUCCACCUu -3'
miRNA:   3'- -GGGucacUGGCGGUGGCG---UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 38313 0.74 0.484734
Target:  5'- aCCCuGuUGACCGUCGCCGUGUCguCGCCg -3'
miRNA:   3'- -GGGuC-ACUGGCGGUGGCGUAG--GUGGg -5'
30165 5' -59 NC_006273.1 + 187906 0.78 0.304528
Target:  5'- -gCGGcuugGACCGCCacauguACCGCAUCCAUCCa -3'
miRNA:   3'- ggGUCa---CUGGCGG------UGGCGUAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 233225 0.77 0.324858
Target:  5'- gCCGcUG-CCGCCGCCGUcgcGUCCGCCCc -3'
miRNA:   3'- gGGUcACuGGCGGUGGCG---UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 2067 0.77 0.353507
Target:  5'- cCCCAGcccACCacauCCACCGCAUCgCACCCa -3'
miRNA:   3'- -GGGUCac-UGGc---GGUGGCGUAG-GUGGG- -5'
30165 5' -59 NC_006273.1 + 56718 0.77 0.353507
Target:  5'- aCCgCGGUcGugcuucuuGCCGCCACCGCcgCCACCUc -3'
miRNA:   3'- -GG-GUCA-C--------UGGCGGUGGCGuaGGUGGG- -5'
30165 5' -59 NC_006273.1 + 71846 0.76 0.383895
Target:  5'- aCgCGG-GACCGCaCGCCGCGUaCCACCa -3'
miRNA:   3'- -GgGUCaCUGGCG-GUGGCGUA-GGUGGg -5'
30165 5' -59 NC_006273.1 + 94595 0.76 0.383895
Target:  5'- uCCCGGcGACCuCCGCCgGCuucccgGUCCACCCg -3'
miRNA:   3'- -GGGUCaCUGGcGGUGG-CG------UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 113900 0.74 0.457406
Target:  5'- gUCAGUGACCcugccgcGUCACCGUguGUCCACUCu -3'
miRNA:   3'- gGGUCACUGG-------CGGUGGCG--UAGGUGGG- -5'
30165 5' -59 NC_006273.1 + 166603 0.74 0.46701
Target:  5'- aCCAGcc-CCGCCAUCGCcgCCGCCg -3'
miRNA:   3'- gGGUCacuGGCGGUGGCGuaGGUGGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.