miRNA display CGI


Results 1 - 20 of 25 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 3' -56.4 NC_006273.1 + 154543 0.66 0.947541
Target:  5'- -cGUGCGUGUGCuacGagacggggggaaacaCCGCCGUGGAUc- -3'
miRNA:   3'- gaCGUGCACACG---U---------------GGUGGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 145684 0.66 0.941424
Target:  5'- -cGCAUGcUGgGCGCUAgCGUGGACc- -3'
miRNA:   3'- gaCGUGC-ACaCGUGGUgGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 136842 0.66 0.941424
Target:  5'- -aGCAuCGcGUGCGCCuCCGUGuGCUGu -3'
miRNA:   3'- gaCGU-GCaCACGUGGuGGCACcUGAU- -5'
30166 3' -56.4 NC_006273.1 + 186598 0.66 0.936783
Target:  5'- aCUGuCGC-UGUGCACCGaugaCGUGGAg-- -3'
miRNA:   3'- -GAC-GUGcACACGUGGUg---GCACCUgau -5'
30166 3' -56.4 NC_006273.1 + 79838 0.66 0.936783
Target:  5'- -gGCGCGc-UGCACCACCucgggGUGGAUg- -3'
miRNA:   3'- gaCGUGCacACGUGGUGG-----CACCUGau -5'
30166 3' -56.4 NC_006273.1 + 121976 0.66 0.931913
Target:  5'- -aGUACGUGUGCugCACC-UGcaGCUGa -3'
miRNA:   3'- gaCGUGCACACGugGUGGcACc-UGAU- -5'
30166 3' -56.4 NC_006273.1 + 6144 0.66 0.931913
Target:  5'- uUGUucacccCGUGUGUACaCGCCGUGGGu-- -3'
miRNA:   3'- gACGu-----GCACACGUG-GUGGCACCUgau -5'
30166 3' -56.4 NC_006273.1 + 94069 0.66 0.931913
Target:  5'- aUGCGCGUcGUGCGCaugCGCCGguauuuuuccacUGGGCg- -3'
miRNA:   3'- gACGUGCA-CACGUG---GUGGC------------ACCUGau -5'
30166 3' -56.4 NC_006273.1 + 86774 0.67 0.915932
Target:  5'- -cGCauuaACGUGUGCAg-ACCGUGGACc- -3'
miRNA:   3'- gaCG----UGCACACGUggUGGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 202788 0.67 0.910147
Target:  5'- -cGCGCGcUGcUGCGUCACCGUGuGACg- -3'
miRNA:   3'- gaCGUGC-AC-ACGUGGUGGCAC-CUGau -5'
30166 3' -56.4 NC_006273.1 + 197383 0.67 0.904136
Target:  5'- cCUGCACccGcGCGCCgcGCUGUGGGCg- -3'
miRNA:   3'- -GACGUGcaCaCGUGG--UGGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 2490 0.67 0.904136
Target:  5'- cCUGCACccGcGCGCCgcGCUGUGGGCg- -3'
miRNA:   3'- -GACGUGcaCaCGUGG--UGGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 123507 0.67 0.904136
Target:  5'- aCUGCAggcUGUGggugGCguGCCACCGcacGGACUGa -3'
miRNA:   3'- -GACGU---GCACa---CG--UGGUGGCa--CCUGAU- -5'
30166 3' -56.4 NC_006273.1 + 34376 0.67 0.897901
Target:  5'- -aGUACG-GUGuCGCCACCGUuGACg- -3'
miRNA:   3'- gaCGUGCaCAC-GUGGUGGCAcCUGau -5'
30166 3' -56.4 NC_006273.1 + 155772 0.67 0.891445
Target:  5'- cCUGCugGUGccggguggcgaGUACC-CCGUGGACc- -3'
miRNA:   3'- -GACGugCACa----------CGUGGuGGCACCUGau -5'
30166 3' -56.4 NC_006273.1 + 225974 0.67 0.890787
Target:  5'- gUGCACGUGaaaguUGCGCCACCcugaugcGUGGuuuCUu -3'
miRNA:   3'- gACGUGCAC-----ACGUGGUGG-------CACCu--GAu -5'
30166 3' -56.4 NC_006273.1 + 174158 0.68 0.88477
Target:  5'- -cGCAUcUGcUGCACCGCCGccucgagacgcUGGGCUGc -3'
miRNA:   3'- gaCGUGcAC-ACGUGGUGGC-----------ACCUGAU- -5'
30166 3' -56.4 NC_006273.1 + 152378 0.68 0.863477
Target:  5'- gUGCAgGUGUGcCACCGgCGUGGugaACa- -3'
miRNA:   3'- gACGUgCACAC-GUGGUgGCACC---UGau -5'
30166 3' -56.4 NC_006273.1 + 142819 0.69 0.813111
Target:  5'- -gGCACGggcGUGCACCGCgGUcugcucacggccacGGGCUGc -3'
miRNA:   3'- gaCGUGCa--CACGUGGUGgCA--------------CCUGAU- -5'
30166 3' -56.4 NC_006273.1 + 68041 0.7 0.789508
Target:  5'- -gGCAgGUGUgggcucggccaGCGCCGCCGUGGccgccGCUGc -3'
miRNA:   3'- gaCGUgCACA-----------CGUGGUGGCACC-----UGAU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.