miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 149932 0.66 0.962114
Target:  5'- --cCGaGCAgGGCCA-GAUCAUCGUa -3'
miRNA:   3'- gaaGCgCGUgCCGGUaCUGGUAGCGg -5'
30166 5' -56.3 NC_006273.1 + 128751 0.66 0.962114
Target:  5'- ---aGCGU-CGucGCCAUuACCGUCGCCg -3'
miRNA:   3'- gaagCGCGuGC--CGGUAcUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 101617 0.66 0.962114
Target:  5'- -gUCGUG-ACGGCCGcgUGAgugcagcuCCAUgGCCg -3'
miRNA:   3'- gaAGCGCgUGCCGGU--ACU--------GGUAgCGG- -5'
30166 5' -56.3 NC_006273.1 + 84876 0.66 0.962114
Target:  5'- ---aGgGCuuGGCCAcgggagcuguUGGCaCGUCGCCa -3'
miRNA:   3'- gaagCgCGugCCGGU----------ACUG-GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 44409 0.66 0.962114
Target:  5'- --gCGCuGCugGGUCAUGACUuUCuGCa -3'
miRNA:   3'- gaaGCG-CGugCCGGUACUGGuAG-CGg -5'
30166 5' -56.3 NC_006273.1 + 69538 0.66 0.962114
Target:  5'- aCUguagCGCcCACGGUC-UGGCCGucaUCGUCg -3'
miRNA:   3'- -GAa---GCGcGUGCCGGuACUGGU---AGCGG- -5'
30166 5' -56.3 NC_006273.1 + 124063 0.66 0.962114
Target:  5'- --cCGCGCuauGCGGCCA-GGCC-UCcCCu -3'
miRNA:   3'- gaaGCGCG---UGCCGGUaCUGGuAGcGG- -5'
30166 5' -56.3 NC_006273.1 + 87039 0.66 0.962114
Target:  5'- -cUCGCGCaccucaaagagGCGuGCCAggacGGCCucGUCGUCg -3'
miRNA:   3'- gaAGCGCG-----------UGC-CGGUa---CUGG--UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 158882 0.66 0.962114
Target:  5'- aUUCGCGCAacagguCGGCCAauACCA--GCUg -3'
miRNA:   3'- gAAGCGCGU------GCCGGUacUGGUagCGG- -5'
30166 5' -56.3 NC_006273.1 + 118178 0.66 0.962114
Target:  5'- ---gGCGUgGCGGCC-UGACUgcggcuGUCGCCc -3'
miRNA:   3'- gaagCGCG-UGCCGGuACUGG------UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 20936 0.66 0.958681
Target:  5'- -cUgGCGUuucuaggUGGCCGUGACgaCGUCGCUg -3'
miRNA:   3'- gaAgCGCGu------GCCGGUACUG--GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 13585 0.66 0.958681
Target:  5'- --cCGcCGgGCGGCCcgGGCCGccgUGCUg -3'
miRNA:   3'- gaaGC-GCgUGCCGGuaCUGGUa--GCGG- -5'
30166 5' -56.3 NC_006273.1 + 159138 0.66 0.958681
Target:  5'- -gUUGUG-ACGGCCcgGAUCGUCuCCu -3'
miRNA:   3'- gaAGCGCgUGCCGGuaCUGGUAGcGG- -5'
30166 5' -56.3 NC_006273.1 + 64833 0.66 0.958681
Target:  5'- -gUCGCGguuCGGCCG-GACCGUgcaCGCg -3'
miRNA:   3'- gaAGCGCgu-GCCGGUaCUGGUA---GCGg -5'
30166 5' -56.3 NC_006273.1 + 63749 0.66 0.958681
Target:  5'- uUUCG-GUcUGGCgCGUGGCCGggcgCGCCu -3'
miRNA:   3'- gAAGCgCGuGCCG-GUACUGGUa---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 234344 0.66 0.958681
Target:  5'- ---gGUGgAC-GCCGUGGCCcggcGUCGCCg -3'
miRNA:   3'- gaagCGCgUGcCGGUACUGG----UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 39451 0.66 0.958681
Target:  5'- ---gGUGgAC-GCCGUGGCCcggcGUCGCCg -3'
miRNA:   3'- gaagCGCgUGcCGGUACUGG----UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 95440 0.66 0.95504
Target:  5'- ---gGUGaCACGGCCucgcaGGCCAccagCGCCa -3'
miRNA:   3'- gaagCGC-GUGCCGGua---CUGGUa---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 68082 0.66 0.95504
Target:  5'- --cCGcCGCuguGGCCggaGUGcCCGUCGCCg -3'
miRNA:   3'- gaaGC-GCGug-CCGG---UACuGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 163175 0.66 0.95504
Target:  5'- --aUGCGCGCucgcugguGGCCGUGGuCUGUCGgCa -3'
miRNA:   3'- gaaGCGCGUG--------CCGGUACU-GGUAGCgG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.