miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 233918 0.66 0.954665
Target:  5'- --gCGCGCACagacccucgggauGGCC--GGCCuuGUCGCCc -3'
miRNA:   3'- gaaGCGCGUG-------------CCGGuaCUGG--UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 64833 0.66 0.958681
Target:  5'- -gUCGCGguuCGGCCG-GACCGUgcaCGCg -3'
miRNA:   3'- gaAGCGCgu-GCCGGUaCUGGUA---GCGg -5'
30166 5' -56.3 NC_006273.1 + 84876 0.66 0.962114
Target:  5'- ---aGgGCuuGGCCAcgggagcuguUGGCaCGUCGCCa -3'
miRNA:   3'- gaagCgCGugCCGGU----------ACUG-GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 216966 0.66 0.951188
Target:  5'- uUUCGCGgGCcgucuuGGCCAcGGCCGcagCGUCa -3'
miRNA:   3'- gAAGCGCgUG------CCGGUaCUGGUa--GCGG- -5'
30166 5' -56.3 NC_006273.1 + 25150 0.66 0.951188
Target:  5'- gUUCuGCGguCGGU--UGAcguCCAUCGCCa -3'
miRNA:   3'- gAAG-CGCguGCCGguACU---GGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 55596 0.66 0.954287
Target:  5'- -gUCGCGCGCcaaCAUGAacucgcgacccaCGUCGCCg -3'
miRNA:   3'- gaAGCGCGUGccgGUACUg-----------GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 191112 0.66 0.942838
Target:  5'- gCUUCGaCGgACGGCCAUccucccucUCAUCGCa -3'
miRNA:   3'- -GAAGC-GCgUGCCGGUAcu------GGUAGCGg -5'
30166 5' -56.3 NC_006273.1 + 63749 0.66 0.958681
Target:  5'- uUUCG-GUcUGGCgCGUGGCCGggcgCGCCu -3'
miRNA:   3'- gAAGCgCGuGCCG-GUACUGGUa---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 213121 0.66 0.947122
Target:  5'- --gCGCGUggcugcgauggaGCGGCacgaugGUGACCGUCGgCg -3'
miRNA:   3'- gaaGCGCG------------UGCCGg-----UACUGGUAGCgG- -5'
30166 5' -56.3 NC_006273.1 + 151046 0.66 0.951188
Target:  5'- -cUCGCuGCGguacuCGGCCAUGgaaACCAgcaGCCc -3'
miRNA:   3'- gaAGCG-CGU-----GCCGGUAC---UGGUag-CGG- -5'
30166 5' -56.3 NC_006273.1 + 190917 0.66 0.945434
Target:  5'- -gUUGuCGCGCGGCUuguuauacgcuaGcCCGUCGCCg -3'
miRNA:   3'- gaAGC-GCGUGCCGGua----------CuGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 196857 0.66 0.942838
Target:  5'- --gCGCgGCGgGGCCGgcgacgggGACgaCGUCGCCg -3'
miRNA:   3'- gaaGCG-CGUgCCGGUa-------CUG--GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 234344 0.66 0.958681
Target:  5'- ---gGUGgAC-GCCGUGGCCcggcGUCGCCg -3'
miRNA:   3'- gaagCGCgUGcCGGUACUGG----UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 73864 0.66 0.947122
Target:  5'- gUUCGCGUgagcGCGGCCGacaugcgGGCg--CGCCa -3'
miRNA:   3'- gAAGCGCG----UGCCGGUa------CUGguaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 158882 0.66 0.962114
Target:  5'- aUUCGCGCAacagguCGGCCAauACCA--GCUg -3'
miRNA:   3'- gAAGCGCGU------GCCGGUacUGGUagCGG- -5'
30166 5' -56.3 NC_006273.1 + 165103 0.66 0.942838
Target:  5'- -gUUGCGUAUGGCCAccACCA-CGUUa -3'
miRNA:   3'- gaAGCGCGUGCCGGUacUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 165838 0.66 0.95504
Target:  5'- --cCGCGacgaugACGGCCA-GACCGUgggCGCUa -3'
miRNA:   3'- gaaGCGCg-----UGCCGGUaCUGGUA---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 23670 0.66 0.942838
Target:  5'- -gUCGCGCuccguGCGGCCcccagaGGCC--CGCCg -3'
miRNA:   3'- gaAGCGCG-----UGCCGGua----CUGGuaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 78308 0.66 0.942838
Target:  5'- -cUCGCGCACGuaGCUcgGAUCuUCGgCu -3'
miRNA:   3'- gaAGCGCGUGC--CGGuaCUGGuAGCgG- -5'
30166 5' -56.3 NC_006273.1 + 209346 0.66 0.951188
Target:  5'- --gUGCGCAgGGUCAUGAuucucagcaCCAUCaGCa -3'
miRNA:   3'- gaaGCGCGUgCCGGUACU---------GGUAG-CGg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.