miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 155699 1.13 0.002581
Target:  5'- aCUUCGCGCACGGCCAUGACCAUCGCCa -3'
miRNA:   3'- -GAAGCGCGUGCCGGUACUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 39617 0.8 0.324438
Target:  5'- -gUUGCGCugGGCCAUGGCC---GCCg -3'
miRNA:   3'- gaAGCGCGugCCGGUACUGGuagCGG- -5'
30166 5' -56.3 NC_006273.1 + 63178 0.79 0.346309
Target:  5'- -cUCGCgGCGCGGCCGgcgcGGCC-UCGCCu -3'
miRNA:   3'- gaAGCG-CGUGCCGGUa---CUGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 157723 0.79 0.346309
Target:  5'- uCUUCGCGCGCcGCCGUGAgCAUCuGCg -3'
miRNA:   3'- -GAAGCGCGUGcCGGUACUgGUAG-CGg -5'
30166 5' -56.3 NC_006273.1 + 192355 0.79 0.361465
Target:  5'- --gCGuUGCGCGGCCGUGGCgCGUCGCg -3'
miRNA:   3'- gaaGC-GCGUGCCGGUACUG-GUAGCGg -5'
30166 5' -56.3 NC_006273.1 + 117411 0.78 0.401332
Target:  5'- uUUCGUGCcCGGCCGUGcucgGCC-UCGCCu -3'
miRNA:   3'- gAAGCGCGuGCCGGUAC----UGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 144774 0.77 0.418044
Target:  5'- --aCGCG-GCGGCCGUGGCC-UCGCUg -3'
miRNA:   3'- gaaGCGCgUGCCGGUACUGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 234510 0.77 0.418044
Target:  5'- -gUUGCGCugGGCCAUGGCCG-CGg- -3'
miRNA:   3'- gaAGCGCGugCCGGUACUGGUaGCgg -5'
30166 5' -56.3 NC_006273.1 + 61280 0.77 0.443887
Target:  5'- --gCGCGCGCGGCCGaGGCCGUguacaCGCUu -3'
miRNA:   3'- gaaGCGCGUGCCGGUaCUGGUA-----GCGG- -5'
30166 5' -56.3 NC_006273.1 + 165234 0.76 0.507446
Target:  5'- --aCGUGUacACGGCCGgcgaGCCAUCGCCg -3'
miRNA:   3'- gaaGCGCG--UGCCGGUac--UGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 16840 0.76 0.508383
Target:  5'- uUUCGCGC-CGGCCucaugaagguguacGugCGUCGCCg -3'
miRNA:   3'- gAAGCGCGuGCCGGua------------CugGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 131273 0.76 0.51685
Target:  5'- uCUUCGgGCACaccgagGGCCAggugcuacUGACCAUgGCCu -3'
miRNA:   3'- -GAAGCgCGUG------CCGGU--------ACUGGUAgCGG- -5'
30166 5' -56.3 NC_006273.1 + 24427 0.75 0.53586
Target:  5'- --cCGUGCugGGCUggGugCAUCGCUu -3'
miRNA:   3'- gaaGCGCGugCCGGuaCugGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 169662 0.75 0.545457
Target:  5'- gCUUCGUcgaaGgACGgcGCCGUGGCCGUUGCCg -3'
miRNA:   3'- -GAAGCG----CgUGC--CGGUACUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 93296 0.74 0.574555
Target:  5'- uUUCGCGgcaGCGcaaGCCGUGguaACCGUCGCCg -3'
miRNA:   3'- gAAGCGCg--UGC---CGGUAC---UGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 206291 0.74 0.584338
Target:  5'- cCUUCGCucgaGCACGGCgGUGuuuuGCCGUCGUUu -3'
miRNA:   3'- -GAAGCG----CGUGCCGgUAC----UGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 162070 0.74 0.603995
Target:  5'- --cUGUgGCGCGGUCAUGGCCAaUCGUCg -3'
miRNA:   3'- gaaGCG-CGUGCCGGUACUGGU-AGCGG- -5'
30166 5' -56.3 NC_006273.1 + 125070 0.74 0.603995
Target:  5'- --cCGcCGCACGGUagaaAUGGCCuUCGCCu -3'
miRNA:   3'- gaaGC-GCGUGCCGg---UACUGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 135098 0.74 0.613855
Target:  5'- -cUCGCGCGUGGCCGUcucgcuacGCCGUCGCg -3'
miRNA:   3'- gaAGCGCGUGCCGGUAc-------UGGUAGCGg -5'
30166 5' -56.3 NC_006273.1 + 195766 0.74 0.620766
Target:  5'- ---gGUGUccgGCGGCCAUGGCCcagcgcaacggcauGUCGCCg -3'
miRNA:   3'- gaagCGCG---UGCCGGUACUGG--------------UAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.