miRNA display CGI


Results 21 - 40 of 213 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 163175 0.66 0.95504
Target:  5'- --aUGCGCGCucgcugguGGCCGUGGuCUGUCGgCa -3'
miRNA:   3'- gaaGCGCGUG--------CCGGUACU-GGUAGCgG- -5'
30166 5' -56.3 NC_006273.1 + 95440 0.66 0.95504
Target:  5'- ---gGUGaCACGGCCucgcaGGCCAccagCGCCa -3'
miRNA:   3'- gaagCGC-GUGCCGGua---CUGGUa---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 68082 0.66 0.95504
Target:  5'- --cCGcCGCuguGGCCggaGUGcCCGUCGCCg -3'
miRNA:   3'- gaaGC-GCGug-CCGG---UACuGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 39025 0.66 0.954665
Target:  5'- --gCGCGCACagacccucgggauGGCC--GGCCuuGUCGCCc -3'
miRNA:   3'- gaaGCGCGUG-------------CCGGuaCUGG--UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 233918 0.66 0.954665
Target:  5'- --gCGCGCACagacccucgggauGGCC--GGCCuuGUCGCCc -3'
miRNA:   3'- gaaGCGCGUG-------------CCGGuaCUGG--UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 55596 0.66 0.954287
Target:  5'- -gUCGCGCGCcaaCAUGAacucgcgacccaCGUCGCCg -3'
miRNA:   3'- gaAGCGCGUGccgGUACUg-----------GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 78802 0.66 0.951188
Target:  5'- ---gGCGCACGGCUgcuuccgaGACC-UCGCg -3'
miRNA:   3'- gaagCGCGUGCCGGua------CUGGuAGCGg -5'
30166 5' -56.3 NC_006273.1 + 216966 0.66 0.951188
Target:  5'- uUUCGCGgGCcgucuuGGCCAcGGCCGcagCGUCa -3'
miRNA:   3'- gAAGCGCgUG------CCGGUaCUGGUa--GCGG- -5'
30166 5' -56.3 NC_006273.1 + 131129 0.66 0.951188
Target:  5'- uCUUC-CGCACGcCCGUG-CUcUCGCCc -3'
miRNA:   3'- -GAAGcGCGUGCcGGUACuGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 209346 0.66 0.951188
Target:  5'- --gUGCGCAgGGUCAUGAuucucagcaCCAUCaGCa -3'
miRNA:   3'- gaaGCGCGUgCCGGUACU---------GGUAG-CGg -5'
30166 5' -56.3 NC_006273.1 + 151046 0.66 0.951188
Target:  5'- -cUCGCuGCGguacuCGGCCAUGgaaACCAgcaGCCc -3'
miRNA:   3'- gaAGCG-CGU-----GCCGGUAC---UGGUag-CGG- -5'
30166 5' -56.3 NC_006273.1 + 25150 0.66 0.951188
Target:  5'- gUUCuGCGguCGGU--UGAcguCCAUCGCCa -3'
miRNA:   3'- gAAG-CGCguGCCGguACU---GGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 175771 0.66 0.951188
Target:  5'- uUUUGCGCAUcGCCGUGGCguUgacgGCCg -3'
miRNA:   3'- gAAGCGCGUGcCGGUACUGguAg---CGG- -5'
30166 5' -56.3 NC_006273.1 + 170958 0.66 0.951188
Target:  5'- -gUCGCuCGCGGCCAggUGugCGgguUCGUa -3'
miRNA:   3'- gaAGCGcGUGCCGGU--ACugGU---AGCGg -5'
30166 5' -56.3 NC_006273.1 + 213121 0.66 0.947122
Target:  5'- --gCGCGUggcugcgauggaGCGGCacgaugGUGACCGUCGgCg -3'
miRNA:   3'- gaaGCGCG------------UGCCGg-----UACUGGUAGCgG- -5'
30166 5' -56.3 NC_006273.1 + 86362 0.66 0.947122
Target:  5'- -gUCGCGCGCGcGUacacacuUGGCCAgcacgCGCUc -3'
miRNA:   3'- gaAGCGCGUGC-CGgu-----ACUGGUa----GCGG- -5'
30166 5' -56.3 NC_006273.1 + 73864 0.66 0.947122
Target:  5'- gUUCGCGUgagcGCGGCCGacaugcgGGCg--CGCCa -3'
miRNA:   3'- gAAGCGCG----UGCCGGUa------CUGguaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 190917 0.66 0.945434
Target:  5'- -gUUGuCGCGCGGCUuguuauacgcuaGcCCGUCGCCg -3'
miRNA:   3'- gaAGC-GCGUGCCGGua----------CuGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 188996 0.66 0.942838
Target:  5'- -cUCGCGauccCugGGCCAUGAUgGg-GCCc -3'
miRNA:   3'- gaAGCGC----GugCCGGUACUGgUagCGG- -5'
30166 5' -56.3 NC_006273.1 + 16441 0.66 0.942838
Target:  5'- --cUGCGuCACGGUCAUGAcaCCGaCGCg -3'
miRNA:   3'- gaaGCGC-GUGCCGGUACU--GGUaGCGg -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.