miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 417 0.67 0.916437
Target:  5'- uUUCGcCGUGCGcGCCGcacgucgcuuuuauUcGCCGUCGCCg -3'
miRNA:   3'- gAAGC-GCGUGC-CGGU--------------AcUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 874 0.74 0.620766
Target:  5'- ---gGUGUccgGCGGCCAUGGCCcagcgcaacggcauGUCGCCg -3'
miRNA:   3'- gaagCGCG---UGCCGGUACUGG--------------UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 1216 0.67 0.940162
Target:  5'- -gUgGCGCGCGGCguuucuggccaacagCAcgGGCCG-CGCCa -3'
miRNA:   3'- gaAgCGCGUGCCG---------------GUa-CUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 6385 0.68 0.906648
Target:  5'- --cCGCGCAaGG-CGUGAUCA-CGCCa -3'
miRNA:   3'- gaaGCGCGUgCCgGUACUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 13585 0.66 0.958681
Target:  5'- --cCGcCGgGCGGCCcgGGCCGccgUGCUg -3'
miRNA:   3'- gaaGC-GCgUGCCGGuaCUGGUa--GCGG- -5'
30166 5' -56.3 NC_006273.1 + 16053 0.69 0.844669
Target:  5'- gCUUCGCGaCugGGuCCGUaACCAcgUCGaCCa -3'
miRNA:   3'- -GAAGCGC-GugCC-GGUAcUGGU--AGC-GG- -5'
30166 5' -56.3 NC_006273.1 + 16441 0.66 0.942838
Target:  5'- --cUGCGuCACGGUCAUGAcaCCGaCGCg -3'
miRNA:   3'- gaaGCGC-GUGCCGGUACU--GGUaGCGg -5'
30166 5' -56.3 NC_006273.1 + 16840 0.76 0.508383
Target:  5'- uUUCGCGC-CGGCCucaugaagguguacGugCGUCGCCg -3'
miRNA:   3'- gAAGCGCGuGCCGGua------------CugGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 16895 0.69 0.867139
Target:  5'- ---gGCGCGCGGCCA-GGCUGgaaCGCa -3'
miRNA:   3'- gaagCGCGUGCCGGUaCUGGUa--GCGg -5'
30166 5' -56.3 NC_006273.1 + 18413 0.68 0.912484
Target:  5'- --aCGC-UGCGGCCGUGGCCAagacgGCCc -3'
miRNA:   3'- gaaGCGcGUGCCGGUACUGGUag---CGG- -5'
30166 5' -56.3 NC_006273.1 + 18528 0.69 0.852347
Target:  5'- --gCGCGCcugcCGGCCuuuUGACCAcaUGCCg -3'
miRNA:   3'- gaaGCGCGu---GCCGGu--ACUGGUa-GCGG- -5'
30166 5' -56.3 NC_006273.1 + 19942 0.67 0.933609
Target:  5'- --gUGCGUuccccGCGGCCGUgaGACCGcCGUCa -3'
miRNA:   3'- gaaGCGCG-----UGCCGGUA--CUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 20505 0.72 0.702316
Target:  5'- --gUGCGCcgcaGCGGCUuugugccgaGACCGUCGCCa -3'
miRNA:   3'- gaaGCGCG----UGCCGGua-------CUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 20936 0.66 0.958681
Target:  5'- -cUgGCGUuucuaggUGGCCGUGACgaCGUCGCUg -3'
miRNA:   3'- gaAgCGCGu------GCCGGUACUG--GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 21795 0.68 0.906052
Target:  5'- --gCGCGUcucuccgGCGGCUGUGGCUAcCGUCg -3'
miRNA:   3'- gaaGCGCG-------UGCCGGUACUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 22723 0.69 0.859838
Target:  5'- ---gGCGC-CGGCaugGAgCGUCGCCg -3'
miRNA:   3'- gaagCGCGuGCCGguaCUgGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 23495 0.67 0.918099
Target:  5'- uCUUUGacacgaGCGCGGCac--GCCGUUGCCa -3'
miRNA:   3'- -GAAGCg-----CGUGCCGguacUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 23670 0.66 0.942838
Target:  5'- -gUCGCGCuccguGCGGCCcccagaGGCC--CGCCg -3'
miRNA:   3'- gaAGCGCG-----UGCCGGua----CUGGuaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 24427 0.75 0.53586
Target:  5'- --cCGUGCugGGCUggGugCAUCGCUu -3'
miRNA:   3'- gaaGCGCGugCCGGuaCugGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 25150 0.66 0.951188
Target:  5'- gUUCuGCGguCGGU--UGAcguCCAUCGCCa -3'
miRNA:   3'- gAAG-CGCguGCCGguACU---GGUAGCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.