miRNA display CGI


Results 1 - 20 of 213 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30166 5' -56.3 NC_006273.1 + 234147 0.71 0.759154
Target:  5'- -cUUGCGCAUGGCgCGgcccgugcuguUGGCCAgaaaCGCCg -3'
miRNA:   3'- gaAGCGCGUGCCG-GU-----------ACUGGUa---GCGG- -5'
30166 5' -56.3 NC_006273.1 + 88575 0.73 0.67206
Target:  5'- --aCGCGCcacagugGCGGCCAUGggcGCCGgcaCGCCu -3'
miRNA:   3'- gaaGCGCG-------UGCCGGUAC---UGGUa--GCGG- -5'
30166 5' -56.3 NC_006273.1 + 146483 0.73 0.673042
Target:  5'- uCUUCGC-CGgaGGCUGUGGCCAgCGCCu -3'
miRNA:   3'- -GAAGCGcGUg-CCGGUACUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 153791 0.73 0.673042
Target:  5'- --cCGC-CGCGGCCGcGGCCGcCGCCu -3'
miRNA:   3'- gaaGCGcGUGCCGGUaCUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 80953 0.72 0.692602
Target:  5'- -aUCGauaGCGCGGCCAcGAgCUGUCGUCg -3'
miRNA:   3'- gaAGCg--CGUGCCGGUaCU-GGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 210574 0.72 0.731094
Target:  5'- aCUUCGCGCAgagcaaGGUgAUGACCAaCGUg -3'
miRNA:   3'- -GAAGCGCGUg-----CCGgUACUGGUaGCGg -5'
30166 5' -56.3 NC_006273.1 + 140959 0.72 0.731094
Target:  5'- -cUCGCGCgugacgaggcGCGGaCCGUGAguuauagccCCAUCGUCa -3'
miRNA:   3'- gaAGCGCG----------UGCC-GGUACU---------GGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 192667 0.71 0.740538
Target:  5'- -gUCGCcgugugGCGCGGCC-UGGCCGgcugucugCGCCc -3'
miRNA:   3'- gaAGCG------CGUGCCGGuACUGGUa-------GCGG- -5'
30166 5' -56.3 NC_006273.1 + 156852 0.71 0.749894
Target:  5'- --cCGCGUGCGcGCCcau-CCGUCGCCg -3'
miRNA:   3'- gaaGCGCGUGC-CGGuacuGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 66028 0.73 0.663211
Target:  5'- --aCGUcaGCACGGCCcgGcGCuCAUCGCCu -3'
miRNA:   3'- gaaGCG--CGUGCCGGuaC-UG-GUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 42877 0.73 0.653357
Target:  5'- -cUCGCGCACcgacaucuuGGCCAgaaUGACCG-CGCUu -3'
miRNA:   3'- gaAGCGCGUG---------CCGGU---ACUGGUaGCGG- -5'
30166 5' -56.3 NC_006273.1 + 167880 0.73 0.643487
Target:  5'- --aCGUGgucCugGGagaaCAUGACCAUCGCCg -3'
miRNA:   3'- gaaGCGC---GugCCg---GUACUGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 63178 0.79 0.346309
Target:  5'- -cUCGCgGCGCGGCCGgcgcGGCC-UCGCCu -3'
miRNA:   3'- gaAGCG-CGUGCCGGUa---CUGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 144774 0.77 0.418044
Target:  5'- --aCGCG-GCGGCCGUGGCC-UCGCUg -3'
miRNA:   3'- gaaGCGCgUGCCGGUACUGGuAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 234510 0.77 0.418044
Target:  5'- -gUUGCGCugGGCCAUGGCCG-CGg- -3'
miRNA:   3'- gaAGCGCGugCCGGUACUGGUaGCgg -5'
30166 5' -56.3 NC_006273.1 + 61280 0.77 0.443887
Target:  5'- --gCGCGCGCGGCCGaGGCCGUguacaCGCUu -3'
miRNA:   3'- gaaGCGCGUGCCGGUaCUGGUA-----GCGG- -5'
30166 5' -56.3 NC_006273.1 + 165234 0.76 0.507446
Target:  5'- --aCGUGUacACGGCCGgcgaGCCAUCGCCg -3'
miRNA:   3'- gaaGCGCG--UGCCGGUac--UGGUAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 195766 0.74 0.620766
Target:  5'- ---gGUGUccgGCGGCCAUGGCCcagcgcaacggcauGUCGCCg -3'
miRNA:   3'- gaagCGCG---UGCCGGUACUGG--------------UAGCGG- -5'
30166 5' -56.3 NC_006273.1 + 142143 0.74 0.623729
Target:  5'- -aUCGCG-ACGGCgaCGUGACCAgcguaCGCCg -3'
miRNA:   3'- gaAGCGCgUGCCG--GUACUGGUa----GCGG- -5'
30166 5' -56.3 NC_006273.1 + 147909 0.73 0.633608
Target:  5'- --cUGCGCuggccuCGGCCGUGACUAcggaCGCCg -3'
miRNA:   3'- gaaGCGCGu-----GCCGGUACUGGUa---GCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.