miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30167 3' -56.4 NC_006273.1 + 87337 0.66 0.956325
Target:  5'- uAUAACgaCGUCGUCGaCGAcgCGGGUUCu -3'
miRNA:   3'- -UGUUGg-GCAGCAGC-GUUcgGCCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 55616 0.66 0.956325
Target:  5'- cGCGACCCa-CGUCGCc-GCCGGucUCg -3'
miRNA:   3'- -UGUUGGGcaGCAGCGuuCGGCCcaAG- -5'
30167 3' -56.4 NC_006273.1 + 100384 0.66 0.952536
Target:  5'- cGCAGa-CGUCGUCGCGuAGCCaGGcgCu -3'
miRNA:   3'- -UGUUggGCAGCAGCGU-UCGGcCCaaG- -5'
30167 3' -56.4 NC_006273.1 + 136698 0.66 0.952536
Target:  5'- cCGGCCgGUCGcCGCc-GCCGcGGUUg -3'
miRNA:   3'- uGUUGGgCAGCaGCGuuCGGC-CCAAg -5'
30167 3' -56.4 NC_006273.1 + 116296 0.66 0.948532
Target:  5'- --uGCCCGUgCGgaccCGCGggacGGCgGGGUUCu -3'
miRNA:   3'- uguUGGGCA-GCa---GCGU----UCGgCCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 127329 0.67 0.937096
Target:  5'- cACAGCCgGUgGUCGUgcagcgcguucacguAAGCCGauagcGGUUCc -3'
miRNA:   3'- -UGUUGGgCAgCAGCG---------------UUCGGC-----CCAAG- -5'
30167 3' -56.4 NC_006273.1 + 188501 0.67 0.935204
Target:  5'- cGCAGCCCcagcgCGUCGCGuacccggugcAGCCGGa--- -3'
miRNA:   3'- -UGUUGGGca---GCAGCGU----------UCGGCCcaag -5'
30167 3' -56.4 NC_006273.1 + 99295 0.67 0.933761
Target:  5'- cGCcGCCCacggcguccucggcGUCGUCGgAGGCCGGuGcgUCg -3'
miRNA:   3'- -UGuUGGG--------------CAGCAGCgUUCGGCC-Ca-AG- -5'
30167 3' -56.4 NC_006273.1 + 64984 0.67 0.930316
Target:  5'- uCAACUCGUUGgCGCGcGCCGuGGUcuUCa -3'
miRNA:   3'- uGUUGGGCAGCaGCGUuCGGC-CCA--AG- -5'
30167 3' -56.4 NC_006273.1 + 189245 0.67 0.928807
Target:  5'- cGCAGCguucgccaccguugCCGUCGUCGUugGAGacggaGGGUUCu -3'
miRNA:   3'- -UGUUG--------------GGCAGCAGCG--UUCgg---CCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 97217 0.67 0.919869
Target:  5'- uGCAACCCGcCugccCGCAGGCCGuGGc-- -3'
miRNA:   3'- -UGUUGGGCaGca--GCGUUCGGC-CCaag -5'
30167 3' -56.4 NC_006273.1 + 91281 0.67 0.919869
Target:  5'- -aGACCC-UCGUCGCGAGCCa----- -3'
miRNA:   3'- ugUUGGGcAGCAGCGUUCGGcccaag -5'
30167 3' -56.4 NC_006273.1 + 140757 0.67 0.919869
Target:  5'- gACGAgCgCGUCa--GCAGGCCGGGUc- -3'
miRNA:   3'- -UGUUgG-GCAGcagCGUUCGGCCCAag -5'
30167 3' -56.4 NC_006273.1 + 227925 0.67 0.919869
Target:  5'- -gGGCCCGUCGUCGUgGAGuuGGa--- -3'
miRNA:   3'- ugUUGGGCAGCAGCG-UUCggCCcaag -5'
30167 3' -56.4 NC_006273.1 + 199413 0.67 0.913172
Target:  5'- cACAagcGCCCGaagccgcgcgagCGU-GCGAGCgGGGUUCa -3'
miRNA:   3'- -UGU---UGGGCa-----------GCAgCGUUCGgCCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 128028 0.67 0.908529
Target:  5'- aACGACacucgagcaGUCGUUGCAuGgCGGGUUCc -3'
miRNA:   3'- -UGUUGgg-------CAGCAGCGUuCgGCCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 51522 0.68 0.902527
Target:  5'- gACAACUCGcucUCGaCGgAGGCCGGGa-- -3'
miRNA:   3'- -UGUUGGGC---AGCaGCgUUCGGCCCaag -5'
30167 3' -56.4 NC_006273.1 + 162843 0.68 0.88322
Target:  5'- cGCAGCCUugCGUCgGCAcGCCGGGa-- -3'
miRNA:   3'- -UGUUGGGcaGCAG-CGUuCGGCCCaag -5'
30167 3' -56.4 NC_006273.1 + 195518 0.68 0.876362
Target:  5'- cGCGGCCCuGUUG-CGCGuguuccuCCGGGUUCc -3'
miRNA:   3'- -UGUUGGG-CAGCaGCGUuc-----GGCCCAAG- -5'
30167 3' -56.4 NC_006273.1 + 625 0.68 0.876362
Target:  5'- cGCGGCCCuGUUG-CGCGuguuccuCCGGGUUCc -3'
miRNA:   3'- -UGUUGGG-CAGCaGCGUuc-----GGCCCAAG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.