Results 1 - 20 of 36 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30167 | 3' | -56.4 | NC_006273.1 | + | 625 | 0.68 | 0.876362 |
Target: 5'- cGCGGCCCuGUUG-CGCGuguuccuCCGGGUUCc -3' miRNA: 3'- -UGUUGGG-CAGCaGCGUuc-----GGCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 1941 | 0.69 | 0.862037 |
Target: 5'- uGCuGCCCG-CG-CGguGGCUGGGUUg -3' miRNA: 3'- -UGuUGGGCaGCaGCguUCGGCCCAAg -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 45925 | 0.71 | 0.761586 |
Target: 5'- aGCGAUCCGacgagacuUCGUCGCGAGgccggcucCCGGGUg- -3' miRNA: 3'- -UGUUGGGC--------AGCAGCGUUC--------GGCCCAag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 47834 | 0.69 | 0.842261 |
Target: 5'- -gGACCUGUCGUCGCuGGGCCucggcgccguacggcGGGagUCg -3' miRNA: 3'- ugUUGGGCAGCAGCG-UUCGG---------------CCCa-AG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 47945 | 0.75 | 0.54644 |
Target: 5'- uGCAGCUacgCGUCGUCGCGGauaacagaccgccGCgCGGGUUCa -3' miRNA: 3'- -UGUUGG---GCAGCAGCGUU-------------CG-GCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 51522 | 0.68 | 0.902527 |
Target: 5'- gACAACUCGcucUCGaCGgAGGCCGGGa-- -3' miRNA: 3'- -UGUUGGGC---AGCaGCgUUCGGCCCaag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 55616 | 0.66 | 0.956325 |
Target: 5'- cGCGACCCa-CGUCGCc-GCCGGucUCg -3' miRNA: 3'- -UGUUGGGcaGCAGCGuuCGGCCcaAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 64984 | 0.67 | 0.930316 |
Target: 5'- uCAACUCGUUGgCGCGcGCCGuGGUcuUCa -3' miRNA: 3'- uGUUGGGCAGCaGCGUuCGGC-CCA--AG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 79007 | 0.69 | 0.846936 |
Target: 5'- gACGACCCGUCuccccccCGCAc-CCGGGUUUu -3' miRNA: 3'- -UGUUGGGCAGca-----GCGUucGGCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 87337 | 0.66 | 0.956325 |
Target: 5'- uAUAACgaCGUCGUCGaCGAcgCGGGUUCu -3' miRNA: 3'- -UGUUGg-GCAGCAGC-GUUcgGCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 91281 | 0.67 | 0.919869 |
Target: 5'- -aGACCC-UCGUCGCGAGCCa----- -3' miRNA: 3'- ugUUGGGcAGCAGCGUUCGGcccaag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 97217 | 0.67 | 0.919869 |
Target: 5'- uGCAACCCGcCugccCGCAGGCCGuGGc-- -3' miRNA: 3'- -UGUUGGGCaGca--GCGUUCGGC-CCaag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 99295 | 0.67 | 0.933761 |
Target: 5'- cGCcGCCCacggcguccucggcGUCGUCGgAGGCCGGuGcgUCg -3' miRNA: 3'- -UGuUGGG--------------CAGCAGCgUUCGGCC-Ca-AG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 100384 | 0.66 | 0.952536 |
Target: 5'- cGCAGa-CGUCGUCGCGuAGCCaGGcgCu -3' miRNA: 3'- -UGUUggGCAGCAGCGU-UCGGcCCaaG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 106957 | 0.73 | 0.665536 |
Target: 5'- aACGACUCGcuuUCGCAGGCCGGGg-- -3' miRNA: 3'- -UGUUGGGCagcAGCGUUCGGCCCaag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 109619 | 0.68 | 0.876362 |
Target: 5'- cACAACCCcugggCcUCGCAAGCCGGcugUCu -3' miRNA: 3'- -UGUUGGGca---GcAGCGUUCGGCCca-AG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 116296 | 0.66 | 0.948532 |
Target: 5'- --uGCCCGUgCGgaccCGCGggacGGCgGGGUUCu -3' miRNA: 3'- uguUGGGCA-GCa---GCGU----UCGgCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 118597 | 0.72 | 0.704713 |
Target: 5'- cGCGGCCuccaCGUCGUCGCAGcGCCGGc--- -3' miRNA: 3'- -UGUUGG----GCAGCAGCGUU-CGGCCcaag -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 127222 | 0.74 | 0.586433 |
Target: 5'- -aAACgCCGUggUGUCGCGccucgauguuGGCCGGGUUCa -3' miRNA: 3'- ugUUG-GGCA--GCAGCGU----------UCGGCCCAAG- -5' |
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30167 | 3' | -56.4 | NC_006273.1 | + | 127329 | 0.67 | 0.937096 |
Target: 5'- cACAGCCgGUgGUCGUgcagcgcguucacguAAGCCGauagcGGUUCc -3' miRNA: 3'- -UGUUGGgCAgCAGCG---------------UUCGGC-----CCAAG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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