miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30167 5' -60.1 NC_006273.1 + 145559 0.66 0.835235
Target:  5'- ----uUCCGGGcggcggugcugGCGGGGGuGGuGGACGg -3'
miRNA:   3'- uuuuuGGGCCCa----------CGCCCCC-CC-UCUGC- -5'
30167 5' -60.1 NC_006273.1 + 40957 0.66 0.81925
Target:  5'- ---uGCgCCGGG-GaCGGGGGGugugcgGGGACGg -3'
miRNA:   3'- uuuuUG-GGCCCaC-GCCCCCC------CUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 992 0.67 0.801811
Target:  5'- gAGuuACCUGGGgacaggGaCGGGGGuugcgccGGGGACGg -3'
miRNA:   3'- -UUuuUGGGCCCa-----C-GCCCCC-------CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 87432 0.67 0.794147
Target:  5'- ---cGCCuCGGGcGaCGGGGGcucGGAGAUGa -3'
miRNA:   3'- uuuuUGG-GCCCaC-GCCCCC---CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 24 0.67 0.794147
Target:  5'- ----cCCCGaGGgGCGGGGGGGuGuuuucuGCGg -3'
miRNA:   3'- uuuuuGGGC-CCaCGCCCCCCCuC------UGC- -5'
30167 5' -60.1 NC_006273.1 + 93916 0.67 0.794147
Target:  5'- aGGGGACCCGGuGcgcaUGCGcGGGccaggacccgcGGGAGGCGc -3'
miRNA:   3'- -UUUUUGGGCC-C----ACGC-CCC-----------CCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 234855 0.67 0.794147
Target:  5'- ----cCCCGaGGgGCGGGGGGGuGuuuucuGCGg -3'
miRNA:   3'- uuuuuGGGC-CCaCGCCCCCCCuC------UGC- -5'
30167 5' -60.1 NC_006273.1 + 39962 0.67 0.794147
Target:  5'- ----cCCCGaGGgGCGGGGGGGuGuuuucuGCGg -3'
miRNA:   3'- uuuuuGGGC-CCaCGCCCCCCCuC------UGC- -5'
30167 5' -60.1 NC_006273.1 + 51538 0.67 0.785507
Target:  5'- cGGAGgCCGGGacgacagagGaCGGGGGGGugguGGCGg -3'
miRNA:   3'- uUUUUgGGCCCa--------C-GCCCCCCCu---CUGC- -5'
30167 5' -60.1 NC_006273.1 + 140907 0.67 0.785507
Target:  5'- cGGGACCCcGGUGCGGGGGucccagcccGGccGGGCc -3'
miRNA:   3'- uUUUUGGGcCCACGCCCCC---------CC--UCUGc -5'
30167 5' -60.1 NC_006273.1 + 1126 0.67 0.767864
Target:  5'- --cGugCCGGG-GaCGGGGGacucuugcggcGGGGACGg -3'
miRNA:   3'- uuuUugGGCCCaC-GCCCCC-----------CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 41064 0.67 0.767864
Target:  5'- --cGugCCGGG-GaCGGGGGacucuugcggcGGGGACGg -3'
miRNA:   3'- uuuUugGGCCCaC-GCCCCC-----------CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 26800 0.67 0.758876
Target:  5'- cGGGAAUCaUGGG-GUGGGGacGGGGGACGc -3'
miRNA:   3'- -UUUUUGG-GCCCaCGCCCC--CCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 105908 0.68 0.748873
Target:  5'- ---uGCUCGGGUGUGuGGGugaaaccgaugucGGGGGugGg -3'
miRNA:   3'- uuuuUGGGCCCACGC-CCC-------------CCCUCugC- -5'
30167 5' -60.1 NC_006273.1 + 141085 0.68 0.740606
Target:  5'- --cGGCCgGGGaggGUGGGGGGuaGGGCGg -3'
miRNA:   3'- uuuUUGGgCCCa--CGCCCCCCc-UCUGC- -5'
30167 5' -60.1 NC_006273.1 + 231964 0.68 0.731339
Target:  5'- --cAACgaCGGG-G-GGGGGGGGGGCGu -3'
miRNA:   3'- uuuUUGg-GCCCaCgCCCCCCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 234478 0.68 0.703109
Target:  5'- --cGACCgaGGG-GCGGGGGGcGcGGCGa -3'
miRNA:   3'- uuuUUGGg-CCCaCGCCCCCC-CuCUGC- -5'
30167 5' -60.1 NC_006273.1 + 39585 0.68 0.703109
Target:  5'- --cGACCgaGGG-GCGGGGGGcGcGGCGa -3'
miRNA:   3'- uuuUUGGg-CCCaCGCCCCCC-CuCUGC- -5'
30167 5' -60.1 NC_006273.1 + 189840 0.69 0.678243
Target:  5'- ---cACgCCGGGUggcaucugcggcaugGCGGGGGG-AGACGc -3'
miRNA:   3'- uuuuUG-GGCCCA---------------CGCCCCCCcUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 213560 0.69 0.6454
Target:  5'- -cAGACCCGaGGUGCGGGGauGuAGugGa -3'
miRNA:   3'- uuUUUGGGC-CCACGCCCCccC-UCugC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.