miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30167 5' -60.1 NC_006273.1 + 156371 1.07 0.002752
Target:  5'- gAAAAACCCGGGUGCGGGGGGGAGACGg -3'
miRNA:   3'- -UUUUUGGGCCCACGCCCCCCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 140836 0.83 0.107109
Target:  5'- cGGAGCCCGGGgaggaGCGGGGuGGGGGugGg -3'
miRNA:   3'- uUUUUGGGCCCa----CGCCCC-CCCUCugC- -5'
30167 5' -60.1 NC_006273.1 + 231436 0.78 0.242375
Target:  5'- uGAAAGuCCCGuGUGgGGGGGGGGGGCa -3'
miRNA:   3'- -UUUUU-GGGCcCACgCCCCCCCUCUGc -5'
30167 5' -60.1 NC_006273.1 + 197930 0.72 0.493408
Target:  5'- ----uCCCGGGUGCccgagacGGGGGGcAGAUGg -3'
miRNA:   3'- uuuuuGGGCCCACGc------CCCCCC-UCUGC- -5'
30167 5' -60.1 NC_006273.1 + 212048 0.71 0.539682
Target:  5'- ---cGCgaGGGUcGCGGGGGuGGGGGCGc -3'
miRNA:   3'- uuuuUGggCCCA-CGCCCCC-CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 140705 0.71 0.55576
Target:  5'- uAGGAACCgGGGUcGCGacccagccccccguGGGGGGAGGgGa -3'
miRNA:   3'- -UUUUUGGgCCCA-CGC--------------CCCCCCUCUgC- -5'
30167 5' -60.1 NC_006273.1 + 43017 0.7 0.625042
Target:  5'- ---cGCCCucuGGGUgccGCGGGGggugugcGGGAGACGa -3'
miRNA:   3'- uuuuUGGG---CCCA---CGCCCC-------CCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 213560 0.69 0.6454
Target:  5'- -cAGACCCGaGGUGCGGGGauGuAGugGa -3'
miRNA:   3'- uuUUUGGGC-CCACGCCCCccC-UCugC- -5'
30167 5' -60.1 NC_006273.1 + 189840 0.69 0.678243
Target:  5'- ---cACgCCGGGUggcaucugcggcaugGCGGGGGG-AGACGc -3'
miRNA:   3'- uuuuUG-GGCCCA---------------CGCCCCCCcUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 39585 0.68 0.703109
Target:  5'- --cGACCgaGGG-GCGGGGGGcGcGGCGa -3'
miRNA:   3'- uuuUUGGg-CCCaCGCCCCCC-CuCUGC- -5'
30167 5' -60.1 NC_006273.1 + 234478 0.68 0.703109
Target:  5'- --cGACCgaGGG-GCGGGGGGcGcGGCGa -3'
miRNA:   3'- uuuUUGGg-CCCaCGCCCCCC-CuCUGC- -5'
30167 5' -60.1 NC_006273.1 + 231964 0.68 0.731339
Target:  5'- --cAACgaCGGG-G-GGGGGGGGGGCGu -3'
miRNA:   3'- uuuUUGg-GCCCaCgCCCCCCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 141085 0.68 0.740606
Target:  5'- --cGGCCgGGGaggGUGGGGGGuaGGGCGg -3'
miRNA:   3'- uuuUUGGgCCCa--CGCCCCCCc-UCUGC- -5'
30167 5' -60.1 NC_006273.1 + 105908 0.68 0.748873
Target:  5'- ---uGCUCGGGUGUGuGGGugaaaccgaugucGGGGGugGg -3'
miRNA:   3'- uuuuUGGGCCCACGC-CCC-------------CCCUCugC- -5'
30167 5' -60.1 NC_006273.1 + 26800 0.67 0.758876
Target:  5'- cGGGAAUCaUGGG-GUGGGGacGGGGGACGc -3'
miRNA:   3'- -UUUUUGG-GCCCaCGCCCC--CCCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 41064 0.67 0.767864
Target:  5'- --cGugCCGGG-GaCGGGGGacucuugcggcGGGGACGg -3'
miRNA:   3'- uuuUugGGCCCaC-GCCCCC-----------CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 1126 0.67 0.767864
Target:  5'- --cGugCCGGG-GaCGGGGGacucuugcggcGGGGACGg -3'
miRNA:   3'- uuuUugGGCCCaC-GCCCCC-----------CCUCUGC- -5'
30167 5' -60.1 NC_006273.1 + 140907 0.67 0.785507
Target:  5'- cGGGACCCcGGUGCGGGGGucccagcccGGccGGGCc -3'
miRNA:   3'- uUUUUGGGcCCACGCCCCC---------CC--UCUGc -5'
30167 5' -60.1 NC_006273.1 + 51538 0.67 0.785507
Target:  5'- cGGAGgCCGGGacgacagagGaCGGGGGGGugguGGCGg -3'
miRNA:   3'- uUUUUgGGCCCa--------C-GCCCCCCCu---CUGC- -5'
30167 5' -60.1 NC_006273.1 + 234855 0.67 0.794147
Target:  5'- ----cCCCGaGGgGCGGGGGGGuGuuuucuGCGg -3'
miRNA:   3'- uuuuuGGGC-CCaCGCCCCCCCuC------UGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.