miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 56012 0.66 0.999673
Target:  5'- gGCGUCGGAGGu--GACaGAGCaGCGg- -3'
miRNA:   3'- gUGUAGCUUCUuuuCUG-CUCG-CGCgc -5'
30168 5' -49.9 NC_006273.1 + 115967 0.66 0.999673
Target:  5'- aCAUAggCGcuGGcuGAGACGGGCgGCGCGc -3'
miRNA:   3'- -GUGUa-GCu-UCuuUUCUGCUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 126497 0.66 0.999673
Target:  5'- aACG-CGA--AAAGGGCGAGCGCaGCc -3'
miRNA:   3'- gUGUaGCUucUUUUCUGCUCGCG-CGc -5'
30168 5' -49.9 NC_006273.1 + 213711 0.66 0.999673
Target:  5'- gCACAUCaGcAAGGucagAAAGGCuAGCGCGUGc -3'
miRNA:   3'- -GUGUAG-C-UUCU----UUUCUGcUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 161363 0.66 0.999658
Target:  5'- aACAUCGAgcucaucgccuucGGAcccgaaaacGAGGGCGAGUacgagaaucugcuGCGCGa -3'
miRNA:   3'- gUGUAGCU-------------UCU---------UUUCUGCUCG-------------CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 115504 0.66 0.999592
Target:  5'- gCGCGgcggCGAAGAAAaucGGccGCGAauggaaGCGCGCGc -3'
miRNA:   3'- -GUGUa---GCUUCUUU---UC--UGCU------CGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 173965 0.66 0.999592
Target:  5'- gAguUCGAGGcgcAGcCGGGCGCGCu -3'
miRNA:   3'- gUguAGCUUCuuuUCuGCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 104145 0.66 0.999592
Target:  5'- gACG-CGgcGAu-GGACGAGaGCGCGg -3'
miRNA:   3'- gUGUaGCuuCUuuUCUGCUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 147560 0.66 0.999592
Target:  5'- gGCGUCGGcgggagcagcGGggGcGGCGGGgGCaGCGg -3'
miRNA:   3'- gUGUAGCU----------UCuuUuCUGCUCgCG-CGC- -5'
30168 5' -49.9 NC_006273.1 + 176224 0.66 0.999592
Target:  5'- gCACGUCGGAGuu--GACGGGgGUuuGCu -3'
miRNA:   3'- -GUGUAGCUUCuuuuCUGCUCgCG--CGc -5'
30168 5' -49.9 NC_006273.1 + 211739 0.66 0.999592
Target:  5'- gACGUCGAGGu--AGAUGuuuGCgGCGCc -3'
miRNA:   3'- gUGUAGCUUCuuuUCUGCu--CG-CGCGc -5'
30168 5' -49.9 NC_006273.1 + 161282 0.66 0.999535
Target:  5'- gACAUCGAGGAGAucaagcccucggccuAcggagugcuGACGAaGUGCGUGg -3'
miRNA:   3'- gUGUAGCUUCUUU---------------U---------CUGCU-CGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 9076 0.66 0.999494
Target:  5'- gGCA-CGggGAAAAGAgGGGCGgacaCGgGg -3'
miRNA:   3'- gUGUaGCuuCUUUUCUgCUCGC----GCgC- -5'
30168 5' -49.9 NC_006273.1 + 71632 0.66 0.999494
Target:  5'- gGCcgUGggGGGAGGACGAGgaggaCGuCGCu -3'
miRNA:   3'- gUGuaGCuuCUUUUCUGCUC-----GC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 144447 0.66 0.999494
Target:  5'- uGCA-CGgcGgcGAGGCGGuGCGCGUGc -3'
miRNA:   3'- gUGUaGCuuCuuUUCUGCU-CGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 80456 0.66 0.999494
Target:  5'- ----cCGAGGGAAAGGCG-GCG-GCGu -3'
miRNA:   3'- guguaGCUUCUUUUCUGCuCGCgCGC- -5'
30168 5' -49.9 NC_006273.1 + 36545 0.66 0.999494
Target:  5'- aGCAUCGAGGccGAGAgccccaGAuCGCGCGc -3'
miRNA:   3'- gUGUAGCUUCuuUUCUg-----CUcGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 157005 0.66 0.999472
Target:  5'- aACAggaGAGGAGGAGAgccggcaaagaaGAGgGCGCGg -3'
miRNA:   3'- gUGUag-CUUCUUUUCUg-----------CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 17367 0.66 0.999375
Target:  5'- aACGUUGAuagaagaggaGGGGAAGACGcgguuGCcGCGCGu -3'
miRNA:   3'- gUGUAGCU----------UCUUUUCUGCu----CG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 129496 0.66 0.999375
Target:  5'- gGCGUCGGAGcucGGGGAa-AGCaGCGCGa -3'
miRNA:   3'- gUGUAGCUUCu--UUUCUgcUCG-CGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.