miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 36545 0.66 0.999494
Target:  5'- aGCAUCGAGGccGAGAgccccaGAuCGCGCGc -3'
miRNA:   3'- gUGUAGCUUCuuUUCUg-----CUcGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 144447 0.66 0.999494
Target:  5'- uGCA-CGgcGgcGAGGCGGuGCGCGUGc -3'
miRNA:   3'- gUGUaGCuuCuuUUCUGCU-CGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 202910 0.66 0.999234
Target:  5'- aCACAUaaaaaaaaaacCGGAGAagacaGAGGACGAGCGUcCa -3'
miRNA:   3'- -GUGUA-----------GCUUCU-----UUUCUGCUCGCGcGc -5'
30168 5' -49.9 NC_006273.1 + 119158 0.66 0.999375
Target:  5'- gACGUUGcuccguGGaAAGAGACcGGCGCGCa -3'
miRNA:   3'- gUGUAGCu-----UC-UUUUCUGcUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 234473 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 213955 0.66 0.999234
Target:  5'- aGC-UgGAAGGcgacGAGGACGgaGGCGCGCa -3'
miRNA:   3'- gUGuAgCUUCU----UUUCUGC--UCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 112166 0.66 0.999336
Target:  5'- cCGCA-CGAGGAAAAcgugcugcgcugcccCGAGCGCGUGc -3'
miRNA:   3'- -GUGUaGCUUCUUUUcu-------------GCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 129496 0.66 0.999375
Target:  5'- gGCGUCGGAGcucGGGGAa-AGCaGCGCGa -3'
miRNA:   3'- gUGUAGCUUCu--UUUCUgcUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 47483 0.66 0.999375
Target:  5'- aGCA--GGAGAAcgacGGCGAGCcGCGCGa -3'
miRNA:   3'- gUGUagCUUCUUuu--CUGCUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 161363 0.66 0.999658
Target:  5'- aACAUCGAgcucaucgccuucGGAcccgaaaacGAGGGCGAGUacgagaaucugcuGCGCGa -3'
miRNA:   3'- gUGUAGCU-------------UCU---------UUUCUGCUCG-------------CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 157005 0.66 0.999472
Target:  5'- aACAggaGAGGAGGAGAgccggcaaagaaGAGgGCGCGg -3'
miRNA:   3'- gUGUag-CUUCUUUUCUg-----------CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 1705 0.66 0.999234
Target:  5'- gCGCGcCGAGGAGgcGACG-GCGCuCGg -3'
miRNA:   3'- -GUGUaGCUUCUUuuCUGCuCGCGcGC- -5'
30168 5' -49.9 NC_006273.1 + 115967 0.66 0.999673
Target:  5'- aCAUAggCGcuGGcuGAGACGGGCgGCGCGc -3'
miRNA:   3'- -GUGUa-GCu-UCuuUUCUGCUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 80456 0.66 0.999494
Target:  5'- ----cCGAGGGAAAGGCG-GCG-GCGu -3'
miRNA:   3'- guguaGCUUCUUUUCUGCuCGCgCGC- -5'
30168 5' -49.9 NC_006273.1 + 71632 0.66 0.999494
Target:  5'- gGCcgUGggGGGAGGACGAGgaggaCGuCGCu -3'
miRNA:   3'- gUGuaGCuuCUUUUCUGCUC-----GC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 213711 0.66 0.999673
Target:  5'- gCACAUCaGcAAGGucagAAAGGCuAGCGCGUGc -3'
miRNA:   3'- -GUGUAG-C-UUCU----UUUCUGcUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 126497 0.66 0.999673
Target:  5'- aACG-CGA--AAAGGGCGAGCGCaGCc -3'
miRNA:   3'- gUGUaGCUucUUUUCUGCUCGCG-CGc -5'
30168 5' -49.9 NC_006273.1 + 39580 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 17367 0.66 0.999375
Target:  5'- aACGUUGAuagaagaggaGGGGAAGACGcgguuGCcGCGCGu -3'
miRNA:   3'- gUGUAGCU----------UCUUUUCUGCu----CG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 99773 0.66 0.999234
Target:  5'- uCACGUCGgcGuAAcGGCcGGCGUGCGu -3'
miRNA:   3'- -GUGUAGCuuCuUUuCUGcUCGCGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.