miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 159211 1.1 0.016056
Target:  5'- gCACAUCGAAGAAAAGACGAGCGCGCGa -3'
miRNA:   3'- -GUGUAGCUUCUUUUCUGCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 13986 0.84 0.473248
Target:  5'- gGCGUCGGAGAGuauaaacuGGGGCGGGCGCGgGg -3'
miRNA:   3'- gUGUAGCUUCUU--------UUCUGCUCGCGCgC- -5'
30168 5' -49.9 NC_006273.1 + 115249 0.81 0.613176
Target:  5'- cCACGUCGGAGAAAgccacguuGGugGAGCaCGCGg -3'
miRNA:   3'- -GUGUAGCUUCUUU--------UCugCUCGcGCGC- -5'
30168 5' -49.9 NC_006273.1 + 109718 0.8 0.66478
Target:  5'- gGCAUCGggGAAGAGACGcgugaGGCGUucgaGCGa -3'
miRNA:   3'- gUGUAGCuuCUUUUCUGC-----UCGCG----CGC- -5'
30168 5' -49.9 NC_006273.1 + 99933 0.78 0.764806
Target:  5'- aCGCAgacggagcccUCGAGcGugGAGACGAGCGCGCa -3'
miRNA:   3'- -GUGU----------AGCUU-CuuUUCUGCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 142308 0.77 0.792903
Target:  5'- aCGCGgugcUCGAAGAAAAcGACGuggagcuGCGCGCGg -3'
miRNA:   3'- -GUGU----AGCUUCUUUU-CUGCu------CGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 96036 0.73 0.931757
Target:  5'- cCAUcUUGGAGGAGGGGCGAGuCGCGgGc -3'
miRNA:   3'- -GUGuAGCUUCUUUUCUGCUC-GCGCgC- -5'
30168 5' -49.9 NC_006273.1 + 192604 0.73 0.936781
Target:  5'- gCGCAUUGAAGAAAccuGGA-GGGUGUGCGc -3'
miRNA:   3'- -GUGUAGCUUCUUU---UCUgCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 95174 0.73 0.941562
Target:  5'- gCACGUCGugucgacguAGAAAAGACG-GCGUgGCGg -3'
miRNA:   3'- -GUGUAGCu--------UCUUUUCUGCuCGCG-CGC- -5'
30168 5' -49.9 NC_006273.1 + 212986 0.73 0.950405
Target:  5'- gCACAUCGggGA--AGGCGAGCcaaGCc -3'
miRNA:   3'- -GUGUAGCuuCUuuUCUGCUCGcg-CGc -5'
30168 5' -49.9 NC_006273.1 + 148984 0.72 0.958306
Target:  5'- cUACAUCGAgugcucaucguGGAuuuGGuCGAGCGCGUGc -3'
miRNA:   3'- -GUGUAGCU-----------UCUuu-UCuGCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 101813 0.72 0.965299
Target:  5'- gGCAUCGGcAGAAacGAGACGAucguaacccagGCGCGUa -3'
miRNA:   3'- gUGUAGCU-UCUU--UUCUGCU-----------CGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 202667 0.71 0.971423
Target:  5'- aCACAgcuacuUUGAAGAc--GugGAGCGCGCu -3'
miRNA:   3'- -GUGU------AGCUUCUuuuCugCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 161953 0.71 0.974175
Target:  5'- -uCAUCGuGGu---GGCGAGCGCGCu -3'
miRNA:   3'- guGUAGCuUCuuuuCUGCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 157772 0.71 0.974175
Target:  5'- gCACGUCGGAGuuuucGAAGAUGA-CGUGCa -3'
miRNA:   3'- -GUGUAGCUUCu----UUUCUGCUcGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 21859 0.71 0.976729
Target:  5'- -uCGUgCGAGGA--GGACGAGCGCGa- -3'
miRNA:   3'- guGUA-GCUUCUuuUCUGCUCGCGCgc -5'
30168 5' -49.9 NC_006273.1 + 131260 0.7 0.985118
Target:  5'- cCGCGUCGGGucuc-GGCGuGCGCGCGc -3'
miRNA:   3'- -GUGUAGCUUcuuuuCUGCuCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 8103 0.7 0.985118
Target:  5'- aCGCGUCGccAGAAAAGcaGCGGGUGaCGCa -3'
miRNA:   3'- -GUGUAGCu-UCUUUUC--UGCUCGC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 214966 0.7 0.986799
Target:  5'- aCACGUCGAuuAGGAGACGAacugggGCGaCGCc -3'
miRNA:   3'- -GUGUAGCUucUUUUCUGCU------CGC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 164532 0.7 0.986799
Target:  5'- aCACGUUGuuGAGGGAGGGCG-GCG-GCGg -3'
miRNA:   3'- -GUGUAGC--UUCUUUUCUGCuCGCgCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.