miRNA display CGI


Results 21 - 40 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 17367 0.66 0.999375
Target:  5'- aACGUUGAuagaagaggaGGGGAAGACGcgguuGCcGCGCGu -3'
miRNA:   3'- gUGUAGCU----------UCUUUUCUGCu----CG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 47483 0.66 0.999375
Target:  5'- aGCA--GGAGAAcgacGGCGAGCcGCGCGa -3'
miRNA:   3'- gUGUagCUUCUUuu--CUGCUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 112166 0.66 0.999336
Target:  5'- cCGCA-CGAGGAAAAcgugcugcgcugcccCGAGCGCGUGc -3'
miRNA:   3'- -GUGUaGCUUCUUUUcu-------------GCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 39580 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 202910 0.66 0.999234
Target:  5'- aCACAUaaaaaaaaaacCGGAGAagacaGAGGACGAGCGUcCa -3'
miRNA:   3'- -GUGUA-----------GCUUCU-----UUUCUGCUCGCGcGc -5'
30168 5' -49.9 NC_006273.1 + 99773 0.66 0.999234
Target:  5'- uCACGUCGgcGuAAcGGCcGGCGUGCGu -3'
miRNA:   3'- -GUGUAGCuuCuUUuCUGcUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 1705 0.66 0.999234
Target:  5'- gCGCGcCGAGGAGgcGACG-GCGCuCGg -3'
miRNA:   3'- -GUGUaGCUUCUUuuCUGCuCGCGcGC- -5'
30168 5' -49.9 NC_006273.1 + 213955 0.66 0.999234
Target:  5'- aGC-UgGAAGGcgacGAGGACGgaGGCGCGCa -3'
miRNA:   3'- gUGuAgCUUCU----UUUCUGC--UCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 234473 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 39523 0.67 0.999065
Target:  5'- cCGCGUCucGGAcAAGAUcacGGCGCGCa -3'
miRNA:   3'- -GUGUAGcuUCUuUUCUGc--UCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 161778 0.67 0.999065
Target:  5'- gGCGggaGAAGGGAAGGCGgcAGCGgcaGCGg -3'
miRNA:   3'- gUGUag-CUUCUUUUCUGC--UCGCg--CGC- -5'
30168 5' -49.9 NC_006273.1 + 83583 0.67 0.999065
Target:  5'- uCGCGgcgCGAGGAcuccauGAGcCuGGGCGCGCGc -3'
miRNA:   3'- -GUGUa--GCUUCUu-----UUCuG-CUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 167406 0.67 0.998866
Target:  5'- aGCGUCGcccAGAcagacuuccacAGuGGCGGGCGCGCu -3'
miRNA:   3'- gUGUAGCu--UCU-----------UUuCUGCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 213833 0.67 0.998866
Target:  5'- gCACGaCGAGGcuGAGAUGAGaaaGCGaCGg -3'
miRNA:   3'- -GUGUaGCUUCuuUUCUGCUCg--CGC-GC- -5'
30168 5' -49.9 NC_006273.1 + 171534 0.67 0.998866
Target:  5'- -uCAUCu-GGGAGAG-CGGGUGCGUGg -3'
miRNA:   3'- guGUAGcuUCUUUUCuGCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 193770 0.67 0.998866
Target:  5'- gACAUCacGGAuaccGAGACGAGCGC-Ca -3'
miRNA:   3'- gUGUAGcuUCUu---UUCUGCUCGCGcGc -5'
30168 5' -49.9 NC_006273.1 + 205187 0.67 0.998866
Target:  5'- cCGCggUGAGGAcaaGAAGACGgagcguGGUGUGCGa -3'
miRNA:   3'- -GUGuaGCUUCU---UUUCUGC------UCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 78209 0.67 0.998632
Target:  5'- gCGCG-CGGuuucgccgccGGGAAAGACGGGCGacaGCa -3'
miRNA:   3'- -GUGUaGCU----------UCUUUUCUGCUCGCg--CGc -5'
30168 5' -49.9 NC_006273.1 + 19755 0.67 0.998632
Target:  5'- --uGUCGAGGA--GGACGAGUG-GCu -3'
miRNA:   3'- gugUAGCUUCUuuUCUGCUCGCgCGc -5'
30168 5' -49.9 NC_006273.1 + 183553 0.67 0.998632
Target:  5'- gCGCGUCGcgacAAGAAuacGGAgGGGCcGCGCa -3'
miRNA:   3'- -GUGUAGC----UUCUUu--UCUgCUCG-CGCGc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.