miRNA display CGI


Results 1 - 20 of 95 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 1705 0.66 0.999234
Target:  5'- gCGCGcCGAGGAGgcGACG-GCGCuCGg -3'
miRNA:   3'- -GUGUaGCUUCUUuuCUGCuCGCGcGC- -5'
30168 5' -49.9 NC_006273.1 + 4644 0.7 0.989586
Target:  5'- ----aCGGAGGAGAGACGAugcauacauacacGCGUGCa -3'
miRNA:   3'- guguaGCUUCUUUUCUGCU-------------CGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 5021 0.68 0.996755
Target:  5'- aCGCGUUGAGuaagcGGAAAGACGuGUGUGaCGa -3'
miRNA:   3'- -GUGUAGCUU-----CUUUUCUGCuCGCGC-GC- -5'
30168 5' -49.9 NC_006273.1 + 8103 0.7 0.985118
Target:  5'- aCGCGUCGccAGAAAAGcaGCGGGUGaCGCa -3'
miRNA:   3'- -GUGUAGCu-UCUUUUC--UGCUCGC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 8381 0.68 0.997669
Target:  5'- gACAUgGuuuGGggGGGACcGGCGgCGCGa -3'
miRNA:   3'- gUGUAgCu--UCuuUUCUGcUCGC-GCGC- -5'
30168 5' -49.9 NC_006273.1 + 9076 0.66 0.999494
Target:  5'- gGCA-CGggGAAAAGAgGGGCGgacaCGgGg -3'
miRNA:   3'- gUGUaGCuuCUUUUCUgCUCGC----GCgC- -5'
30168 5' -49.9 NC_006273.1 + 13986 0.84 0.473248
Target:  5'- gGCGUCGGAGAGuauaaacuGGGGCGGGCGCGgGg -3'
miRNA:   3'- gUGUAGCUUCUU--------UUCUGCUCGCGCgC- -5'
30168 5' -49.9 NC_006273.1 + 17367 0.66 0.999375
Target:  5'- aACGUUGAuagaagaggaGGGGAAGACGcgguuGCcGCGCGu -3'
miRNA:   3'- gUGUAGCU----------UCUUUUCUGCu----CG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 19755 0.67 0.998632
Target:  5'- --uGUCGAGGA--GGACGAGUG-GCu -3'
miRNA:   3'- gugUAGCUUCUuuUCUGCUCGCgCGc -5'
30168 5' -49.9 NC_006273.1 + 20257 0.7 0.98833
Target:  5'- gACAUCGAGuauGAGAguuauauccCGGGCGCGCu -3'
miRNA:   3'- gUGUAGCUUcuuUUCU---------GCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 21859 0.71 0.976729
Target:  5'- -uCGUgCGAGGA--GGACGAGCGCGa- -3'
miRNA:   3'- guGUA-GCUUCUuuUCUGCUCGCGCgc -5'
30168 5' -49.9 NC_006273.1 + 30651 0.68 0.996702
Target:  5'- uCGCGUCGGcaaccgcAGAucgcaGCGGGCGCGCc -3'
miRNA:   3'- -GUGUAGCU-------UCUuuuc-UGCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 30912 0.68 0.996197
Target:  5'- gACAUCGAAGAcuu--UGAGCGCGa- -3'
miRNA:   3'- gUGUAGCUUCUuuucuGCUCGCGCgc -5'
30168 5' -49.9 NC_006273.1 + 36545 0.66 0.999494
Target:  5'- aGCAUCGAGGccGAGAgccccaGAuCGCGCGc -3'
miRNA:   3'- gUGUAGCUUCuuUUCUg-----CUcGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 39523 0.67 0.999065
Target:  5'- cCGCGUCucGGAcAAGAUcacGGCGCGCa -3'
miRNA:   3'- -GUGUAGcuUCUuUUCUGc--UCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 39580 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 46683 0.69 0.994034
Target:  5'- gACAUCGAggaacucuuGGAAAAGGCG-GUGCagaGCGu -3'
miRNA:   3'- gUGUAGCU---------UCUUUUCUGCuCGCG---CGC- -5'
30168 5' -49.9 NC_006273.1 + 47483 0.66 0.999375
Target:  5'- aGCA--GGAGAAcgacGGCGAGCcGCGCGa -3'
miRNA:   3'- gUGUagCUUCUUuu--CUGCUCG-CGCGC- -5'
30168 5' -49.9 NC_006273.1 + 56012 0.66 0.999673
Target:  5'- gGCGUCGGAGGu--GACaGAGCaGCGg- -3'
miRNA:   3'- gUGUAGCUUCUuuuCUG-CUCG-CGCgc -5'
30168 5' -49.9 NC_006273.1 + 57026 0.68 0.997669
Target:  5'- gACGagGAGGAGGAGGCGuccgcGGCcCGCGa -3'
miRNA:   3'- gUGUagCUUCUUUUCUGC-----UCGcGCGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.