miRNA display CGI


Results 1 - 20 of 95 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30168 5' -49.9 NC_006273.1 + 234473 0.66 0.999234
Target:  5'- gGCcgCGAccGAGGGGCgGGGgGCGCGg -3'
miRNA:   3'- gUGuaGCUucUUUUCUG-CUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 220805 0.7 0.986799
Target:  5'- aGCAUCGAucGGucAGGAgGAG-GCGCGa -3'
miRNA:   3'- gUGUAGCU--UCuuUUCUgCUCgCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 214966 0.7 0.986799
Target:  5'- aCACGUCGAuuAGGAGACGAacugggGCGaCGCc -3'
miRNA:   3'- -GUGUAGCUucUUUUCUGCU------CGC-GCGc -5'
30168 5' -49.9 NC_006273.1 + 213955 0.66 0.999234
Target:  5'- aGC-UgGAAGGcgacGAGGACGgaGGCGCGCa -3'
miRNA:   3'- gUGuAgCUUCU----UUUCUGC--UCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 213833 0.67 0.998866
Target:  5'- gCACGaCGAGGcuGAGAUGAGaaaGCGaCGg -3'
miRNA:   3'- -GUGUaGCUUCuuUUCUGCUCg--CGC-GC- -5'
30168 5' -49.9 NC_006273.1 + 213711 0.66 0.999673
Target:  5'- gCACAUCaGcAAGGucagAAAGGCuAGCGCGUGc -3'
miRNA:   3'- -GUGUAG-C-UUCU----UUUCUGcUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 212986 0.73 0.950405
Target:  5'- gCACAUCGggGA--AGGCGAGCcaaGCc -3'
miRNA:   3'- -GUGUAGCuuCUuuUCUGCUCGcg-CGc -5'
30168 5' -49.9 NC_006273.1 + 211739 0.66 0.999592
Target:  5'- gACGUCGAGGu--AGAUGuuuGCgGCGCc -3'
miRNA:   3'- gUGUAGCUUCuuuUCUGCu--CG-CGCGc -5'
30168 5' -49.9 NC_006273.1 + 205187 0.67 0.998866
Target:  5'- cCGCggUGAGGAcaaGAAGACGgagcguGGUGUGCGa -3'
miRNA:   3'- -GUGuaGCUUCU---UUUCUGC------UCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 202910 0.66 0.999234
Target:  5'- aCACAUaaaaaaaaaacCGGAGAagacaGAGGACGAGCGUcCa -3'
miRNA:   3'- -GUGUA-----------GCUUCU-----UUUCUGCUCGCGcGc -5'
30168 5' -49.9 NC_006273.1 + 202667 0.71 0.971423
Target:  5'- aCACAgcuacuUUGAAGAc--GugGAGCGCGCu -3'
miRNA:   3'- -GUGU------AGCUUCUuuuCugCUCGCGCGc -5'
30168 5' -49.9 NC_006273.1 + 196252 0.67 0.998554
Target:  5'- gGCGUCGu-GAAAGGcACGgcguaaugcgggcaGGCGUGCGg -3'
miRNA:   3'- gUGUAGCuuCUUUUC-UGC--------------UCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 193770 0.67 0.998866
Target:  5'- gACAUCacGGAuaccGAGACGAGCGC-Ca -3'
miRNA:   3'- gUGUAGcuUCUu---UUCUGCUCGCGcGc -5'
30168 5' -49.9 NC_006273.1 + 192604 0.73 0.936781
Target:  5'- gCGCAUUGAAGAAAccuGGA-GGGUGUGCGc -3'
miRNA:   3'- -GUGUAGCUUCUUU---UCUgCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 192466 0.7 0.98833
Target:  5'- cCACGaUGccGAGAucGugGAGCGCGCGc -3'
miRNA:   3'- -GUGUaGCuuCUUUu-CugCUCGCGCGC- -5'
30168 5' -49.9 NC_006273.1 + 189382 0.67 0.998039
Target:  5'- aCGCGUgugCGggGAc--GACGGGCGuUGCGg -3'
miRNA:   3'- -GUGUA---GCuuCUuuuCUGCUCGC-GCGC- -5'
30168 5' -49.9 NC_006273.1 + 183553 0.67 0.998632
Target:  5'- gCGCGUCGcgacAAGAAuacGGAgGGGCcGCGCa -3'
miRNA:   3'- -GUGUAGC----UUCUUu--UCUgCUCG-CGCGc -5'
30168 5' -49.9 NC_006273.1 + 177179 0.67 0.998039
Target:  5'- gGCAccguguUCGAGGAGGAGACG-GUGUGg- -3'
miRNA:   3'- gUGU------AGCUUCUUUUCUGCuCGCGCgc -5'
30168 5' -49.9 NC_006273.1 + 176224 0.66 0.999592
Target:  5'- gCACGUCGGAGuu--GACGGGgGUuuGCu -3'
miRNA:   3'- -GUGUAGCUUCuuuuCUGCUCgCG--CGc -5'
30168 5' -49.9 NC_006273.1 + 173965 0.66 0.999592
Target:  5'- gAguUCGAGGcgcAGcCGGGCGCGCu -3'
miRNA:   3'- gUguAGCUUCuuuUCuGCUCGCGCGc -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.