Results 1 - 20 of 95 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30168 | 5' | -49.9 | NC_006273.1 | + | 104331 | 0.68 | 0.995562 |
Target: 5'- gCGCcgaGAGGggGauGGGCuGGCGCGCGg -3' miRNA: 3'- -GUGuagCUUCuuU--UCUGcUCGCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 4644 | 0.7 | 0.989586 |
Target: 5'- ----aCGGAGGAGAGACGAugcauacauacacGCGUGCa -3' miRNA: 3'- guguaGCUUCUUUUCUGCU-------------CGCGCGc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 104246 | 0.7 | 0.989719 |
Target: 5'- cCGCcguguUCGGGcGAGAGcACGGGCGUGCGg -3' miRNA: 3'- -GUGu----AGCUUcUUUUC-UGCUCGCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 63084 | 0.69 | 0.990856 |
Target: 5'- gCACAUaCGAAGGgugccacGGAGGCGgAGCGCGa- -3' miRNA: 3'- -GUGUA-GCUUCU-------UUUCUGC-UCGCGCgc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 118879 | 0.69 | 0.992108 |
Target: 5'- gACGUgccaCGAGGGGAuGACGAGCGUGa- -3' miRNA: 3'- gUGUA----GCUUCUUUuCUGCUCGCGCgc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 133418 | 0.69 | 0.993028 |
Target: 5'- gCGCGUCGAGGAGAAcgaccuugucaacGugGuGCuGCGCc -3' miRNA: 3'- -GUGUAGCUUCUUUU-------------CugCuCG-CGCGc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 60886 | 0.69 | 0.994034 |
Target: 5'- aCACA--GAGGGAucuGGcGCGGGCGCGUGa -3' miRNA: 3'- -GUGUagCUUCUUu--UC-UGCUCGCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 80936 | 0.69 | 0.994034 |
Target: 5'- gAUAUCGAAGGAcAGGCaucGAuaGCGCGg -3' miRNA: 3'- gUGUAGCUUCUUuUCUG---CUcgCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 141844 | 0.69 | 0.994034 |
Target: 5'- uCACGUCGAu--GAAGACGAG-GuCGUGg -3' miRNA: 3'- -GUGUAGCUucuUUUCUGCUCgC-GCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 103943 | 0.7 | 0.98833 |
Target: 5'- aCGCGcUGAcGGAAGGGCGAGCccaguagcagacGCGCGa -3' miRNA: 3'- -GUGUaGCUuCUUUUCUGCUCG------------CGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 214966 | 0.7 | 0.986799 |
Target: 5'- aCACGUCGAuuAGGAGACGAacugggGCGaCGCc -3' miRNA: 3'- -GUGUAGCUucUUUUCUGCU------CGC-GCGc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 164532 | 0.7 | 0.986799 |
Target: 5'- aCACGUUGuuGAGGGAGGGCG-GCG-GCGg -3' miRNA: 3'- -GUGUAGC--UUCUUUUCUGCuCGCgCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 115249 | 0.81 | 0.613176 |
Target: 5'- cCACGUCGGAGAAAgccacguuGGugGAGCaCGCGg -3' miRNA: 3'- -GUGUAGCUUCUUU--------UCugCUCGcGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 109718 | 0.8 | 0.66478 |
Target: 5'- gGCAUCGggGAAGAGACGcgugaGGCGUucgaGCGa -3' miRNA: 3'- gUGUAGCuuCUUUUCUGC-----UCGCG----CGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 142308 | 0.77 | 0.792903 |
Target: 5'- aCGCGgugcUCGAAGAAAAcGACGuggagcuGCGCGCGg -3' miRNA: 3'- -GUGU----AGCUUCUUUU-CUGCu------CGCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 96036 | 0.73 | 0.931757 |
Target: 5'- cCAUcUUGGAGGAGGGGCGAGuCGCGgGc -3' miRNA: 3'- -GUGuAGCUUCUUUUCUGCUC-GCGCgC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 212986 | 0.73 | 0.950405 |
Target: 5'- gCACAUCGggGA--AGGCGAGCcaaGCc -3' miRNA: 3'- -GUGUAGCuuCUuuUCUGCUCGcg-CGc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 148984 | 0.72 | 0.958306 |
Target: 5'- cUACAUCGAgugcucaucguGGAuuuGGuCGAGCGCGUGc -3' miRNA: 3'- -GUGUAGCU-----------UCUuu-UCuGCUCGCGCGC- -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 21859 | 0.71 | 0.976729 |
Target: 5'- -uCGUgCGAGGA--GGACGAGCGCGa- -3' miRNA: 3'- guGUA-GCUUCUuuUCUGCUCGCGCgc -5' |
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30168 | 5' | -49.9 | NC_006273.1 | + | 131260 | 0.7 | 0.985118 |
Target: 5'- cCGCGUCGGGucuc-GGCGuGCGCGCGc -3' miRNA: 3'- -GUGUAGCUUcuuuuCUGCuCGCGCGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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