miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 3' -56.4 NC_006273.1 + 86458 0.66 0.955109
Target:  5'- --aGCGUcGUCgCUCGgcGGGUGcGCAccGCc -3'
miRNA:   3'- agaCGCA-CAG-GAGCaaCCCAC-CGU--CG- -5'
30169 3' -56.4 NC_006273.1 + 145619 0.66 0.955109
Target:  5'- gUCUggGCGgcgGUCgUgGUgguggGGGUGGCGGg -3'
miRNA:   3'- -AGA--CGCa--CAGgAgCAa----CCCACCGUCg -5'
30169 3' -56.4 NC_006273.1 + 29800 0.66 0.955109
Target:  5'- aUCUGCcUGUUgUgGUggcUGGGaguggUGGCGGCa -3'
miRNA:   3'- -AGACGcACAGgAgCA---ACCC-----ACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 168679 0.66 0.951244
Target:  5'- aUCUGCGUGaggcgacCCUCGUuuugcUGcGUGGCuuGCu -3'
miRNA:   3'- -AGACGCACa------GGAGCA-----ACcCACCGu-CG- -5'
30169 3' -56.4 NC_006273.1 + 40789 0.66 0.947163
Target:  5'- gUUGCGgg-CgCUCGggGGuUGGCGGCg -3'
miRNA:   3'- aGACGCacaG-GAGCaaCCcACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 106264 0.66 0.947163
Target:  5'- ---aCG-GUgUUCGUUGGGcGGCGGCa -3'
miRNA:   3'- agacGCaCAgGAGCAACCCaCCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 851 0.66 0.947163
Target:  5'- gUUGCGgg-CgCUCGggGGuUGGCGGCg -3'
miRNA:   3'- aGACGCacaG-GAGCaaCCcACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 189322 0.66 0.93834
Target:  5'- cCUGCGg--CgUCGgcGGGUGGguGg -3'
miRNA:   3'- aGACGCacaGgAGCaaCCCACCguCg -5'
30169 3' -56.4 NC_006273.1 + 214732 0.67 0.93552
Target:  5'- gUUGaCGUGguUCCUCGUucugccggagcaccgUGGGUgccGGCGGUa -3'
miRNA:   3'- aGAC-GCAC--AGGAGCA---------------ACCCA---CCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 234930 0.67 0.933595
Target:  5'- gUUGCGUGUgCUgCGgUGGGUacGGCgacGGCg -3'
miRNA:   3'- aGACGCACAgGA-GCaACCCA--CCG---UCG- -5'
30169 3' -56.4 NC_006273.1 + 99 0.67 0.933595
Target:  5'- gUUGCGUGUgCUgCGgUGGGUacGGCgacGGCg -3'
miRNA:   3'- aGACGCACAgGA-GCaACCCA--CCG---UCG- -5'
30169 3' -56.4 NC_006273.1 + 40037 0.67 0.933595
Target:  5'- gUUGCGUGUgCUgCGgUGGGUacGGCgacGGCg -3'
miRNA:   3'- aGACGCACAgGA-GCaACCCA--CCG---UCG- -5'
30169 3' -56.4 NC_006273.1 + 151969 0.67 0.929133
Target:  5'- --cGCGgaUGUCCcgcUCGggcgccgccgggccGGGUGGCGGCg -3'
miRNA:   3'- agaCGC--ACAGG---AGCaa------------CCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 193587 0.67 0.923431
Target:  5'- cUCUGUuggaaGUG-CCgCGUUGGGcgGGCAGg -3'
miRNA:   3'- -AGACG-----CACaGGaGCAACCCa-CCGUCg -5'
30169 3' -56.4 NC_006273.1 + 192738 0.67 0.91237
Target:  5'- gCUGCGUGUgugCUUUGgcagacGcGGUGGCAGUu -3'
miRNA:   3'- aGACGCACA---GGAGCaa----C-CCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 233984 0.67 0.91237
Target:  5'- -gUGUGUugGUCCUC--UGGGUGaaGCGGCg -3'
miRNA:   3'- agACGCA--CAGGAGcaACCCAC--CGUCG- -5'
30169 3' -56.4 NC_006273.1 + 186053 0.67 0.906505
Target:  5'- uUCaGCGUcGUCCgCGc-GGGcGGCAGCa -3'
miRNA:   3'- -AGaCGCA-CAGGaGCaaCCCaCCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 147793 0.68 0.894115
Target:  5'- -aUGUcUGUUUUUGgaucUGGGUGGCGGCc -3'
miRNA:   3'- agACGcACAGGAGCa---ACCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 170743 0.68 0.880863
Target:  5'- --aGCGcccaacagGUCCaCGg-GGGUGGCAGCg -3'
miRNA:   3'- agaCGCa-------CAGGaGCaaCCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 43021 0.68 0.880863
Target:  5'- cUCUGgGUG-CCgCGggGGGUGuGCGGg -3'
miRNA:   3'- -AGACgCACaGGaGCaaCCCAC-CGUCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.