miRNA display CGI


Results 1 - 20 of 30 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 3' -56.4 NC_006273.1 + 162235 1.13 0.002439
Target:  5'- gUCUGCGUGUCCUCGUUGGGUGGCAGCg -3'
miRNA:   3'- -AGACGCACAGGAGCAACCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 235090 0.73 0.622108
Target:  5'- gUCUGCGUguGUCCUCGacgcGGGuUGuGCAGUg -3'
miRNA:   3'- -AGACGCA--CAGGAGCaa--CCC-AC-CGUCG- -5'
30169 3' -56.4 NC_006273.1 + 259 0.73 0.622108
Target:  5'- gUCUGCGUguGUCCUCGacgcGGGuUGuGCAGUg -3'
miRNA:   3'- -AGACGCA--CAGGAGCaa--CCC-AC-CGUCG- -5'
30169 3' -56.4 NC_006273.1 + 195152 0.73 0.622108
Target:  5'- gUCUGCGUguGUCCUCGacgcGGGuUGuGCAGUg -3'
miRNA:   3'- -AGACGCA--CAGGAGCaa--CCC-AC-CGUCG- -5'
30169 3' -56.4 NC_006273.1 + 146334 0.72 0.672625
Target:  5'- gUCUGCGUGUCuCUuuuuuauguccaUGUcuccaagucuggugcGGGUGGCGGCg -3'
miRNA:   3'- -AGACGCACAG-GA------------GCAa--------------CCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 99448 0.72 0.681485
Target:  5'- --aGCaUGUCCUCGUaaucGGGcgucUGGCAGCg -3'
miRNA:   3'- agaCGcACAGGAGCAa---CCC----ACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 36435 0.72 0.681485
Target:  5'- -aUGCGUGUUCa-GUUGGGcGGCAGg -3'
miRNA:   3'- agACGCACAGGagCAACCCaCCGUCg -5'
30169 3' -56.4 NC_006273.1 + 147427 0.71 0.767394
Target:  5'- --cGCGgcGUCCggCGUcggGGGUGGCGGUc -3'
miRNA:   3'- agaCGCa-CAGGa-GCAa--CCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 187183 0.7 0.802999
Target:  5'- --aGCGUGUgugggccggcCCUCGgggugcGGGUGGCGGg -3'
miRNA:   3'- agaCGCACA----------GGAGCaa----CCCACCGUCg -5'
30169 3' -56.4 NC_006273.1 + 164485 0.69 0.851906
Target:  5'- gCUGC-UGaaCUCGUgcgaUGGGUGGCGGg -3'
miRNA:   3'- aGACGcACagGAGCA----ACCCACCGUCg -5'
30169 3' -56.4 NC_006273.1 + 43021 0.68 0.880863
Target:  5'- cUCUGgGUG-CCgCGggGGGUGuGCGGg -3'
miRNA:   3'- -AGACgCACaGGaGCaaCCCAC-CGUCg -5'
30169 3' -56.4 NC_006273.1 + 170743 0.68 0.880863
Target:  5'- --aGCGcccaacagGUCCaCGg-GGGUGGCAGCg -3'
miRNA:   3'- agaCGCa-------CAGGaGCaaCCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 147793 0.68 0.894115
Target:  5'- -aUGUcUGUUUUUGgaucUGGGUGGCGGCc -3'
miRNA:   3'- agACGcACAGGAGCa---ACCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 186053 0.67 0.906505
Target:  5'- uUCaGCGUcGUCCgCGc-GGGcGGCAGCa -3'
miRNA:   3'- -AGaCGCA-CAGGaGCaaCCCaCCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 233984 0.67 0.91237
Target:  5'- -gUGUGUugGUCCUC--UGGGUGaaGCGGCg -3'
miRNA:   3'- agACGCA--CAGGAGcaACCCAC--CGUCG- -5'
30169 3' -56.4 NC_006273.1 + 192738 0.67 0.91237
Target:  5'- gCUGCGUGUgugCUUUGgcagacGcGGUGGCAGUu -3'
miRNA:   3'- aGACGCACA---GGAGCaa----C-CCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 193587 0.67 0.923431
Target:  5'- cUCUGUuggaaGUG-CCgCGUUGGGcgGGCAGg -3'
miRNA:   3'- -AGACG-----CACaGGaGCAACCCa-CCGUCg -5'
30169 3' -56.4 NC_006273.1 + 151969 0.67 0.929133
Target:  5'- --cGCGgaUGUCCcgcUCGggcgccgccgggccGGGUGGCGGCg -3'
miRNA:   3'- agaCGC--ACAGG---AGCaa------------CCCACCGUCG- -5'
30169 3' -56.4 NC_006273.1 + 234930 0.67 0.933595
Target:  5'- gUUGCGUGUgCUgCGgUGGGUacGGCgacGGCg -3'
miRNA:   3'- aGACGCACAgGA-GCaACCCA--CCG---UCG- -5'
30169 3' -56.4 NC_006273.1 + 99 0.67 0.933595
Target:  5'- gUUGCGUGUgCUgCGgUGGGUacGGCgacGGCg -3'
miRNA:   3'- aGACGCACAgGA-GCaACCCA--CCG---UCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.