miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 5' -57 NC_006273.1 + 156814 0.66 0.947764
Target:  5'- uGGCGGCCCgUUCUGaGGAGcuacccuCGGUc -3'
miRNA:   3'- gCUGCCGGG-AAGACgCCUCcuu----GUCG- -5'
30169 5' -57 NC_006273.1 + 218203 0.66 0.947764
Target:  5'- gCGGCGGCCgacg-GCGGAcGAcCGGCa -3'
miRNA:   3'- -GCUGCCGGgaagaCGCCUcCUuGUCG- -5'
30169 5' -57 NC_006273.1 + 141151 0.66 0.943535
Target:  5'- aCGGcCGGaaCCCUgccgcggaCUGCGccGGGGGGCGGCg -3'
miRNA:   3'- -GCU-GCC--GGGAa-------GACGC--CUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 71732 0.66 0.943535
Target:  5'- cCGACGuccGCCCggCgGUGGuGGuGGCGGCg -3'
miRNA:   3'- -GCUGC---CGGGaaGaCGCCuCC-UUGUCG- -5'
30169 5' -57 NC_006273.1 + 68010 0.66 0.943535
Target:  5'- cCGGCGGCgUcaugggugGCGGAGGAcugcCGGCa -3'
miRNA:   3'- -GCUGCCGgGaaga----CGCCUCCUu---GUCG- -5'
30169 5' -57 NC_006273.1 + 157405 0.66 0.943535
Target:  5'- aGGCGGCgUggaCUGagacgaGGAGGAGgGGCc -3'
miRNA:   3'- gCUGCCGgGaa-GACg-----CCUCCUUgUCG- -5'
30169 5' -57 NC_006273.1 + 84857 0.66 0.939089
Target:  5'- gCGGCGGCCg-UCaggGUGGAGGGcuuGGCc -3'
miRNA:   3'- -GCUGCCGGgaAGa--CGCCUCCUug-UCG- -5'
30169 5' -57 NC_006273.1 + 113348 0.66 0.939089
Target:  5'- gCGACGuGCCCgucUUUGUGcacGAACAGCa -3'
miRNA:   3'- -GCUGC-CGGGa--AGACGCcucCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 158326 0.66 0.934424
Target:  5'- uGGCGGCgCU--UGCGGAgcagGGAGC-GCa -3'
miRNA:   3'- gCUGCCGgGAagACGCCU----CCUUGuCG- -5'
30169 5' -57 NC_006273.1 + 41260 0.66 0.929539
Target:  5'- uCGACGGCCUccgagggGUGGuGGAcACGGUg -3'
miRNA:   3'- -GCUGCCGGGaaga---CGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 39577 0.66 0.929539
Target:  5'- -cGCGGCCgCgacCgagggGCGGGGGGcGCGGCg -3'
miRNA:   3'- gcUGCCGG-Gaa-Ga----CGCCUCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 81128 0.66 0.929539
Target:  5'- uCGGCGGCguaCgaggggUUGCGGAuGGAGCugGGCg -3'
miRNA:   3'- -GCUGCCGg--Gaa----GACGCCU-CCUUG--UCG- -5'
30169 5' -57 NC_006273.1 + 24940 0.66 0.929539
Target:  5'- -cGCGGCCCUggcuuggcccCUGCGGcugcuuuuGGGcuucuACAGCa -3'
miRNA:   3'- gcUGCCGGGAa---------GACGCC--------UCCu----UGUCG- -5'
30169 5' -57 NC_006273.1 + 234470 0.66 0.929539
Target:  5'- -cGCGGCCgCgacCgagggGCGGGGGGcGCGGCg -3'
miRNA:   3'- gcUGCCGG-Gaa-Ga----CGCCUCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 122251 0.66 0.92803
Target:  5'- gCGGCGcGCCC-UCUGCGGccgccgccuuacauAGGca-GGCg -3'
miRNA:   3'- -GCUGC-CGGGaAGACGCC--------------UCCuugUCG- -5'
30169 5' -57 NC_006273.1 + 149571 0.67 0.924433
Target:  5'- gCGGCGGCCgggCccGUGGAGGA--GGCa -3'
miRNA:   3'- -GCUGCCGGgaaGa-CGCCUCCUugUCG- -5'
30169 5' -57 NC_006273.1 + 122993 0.67 0.923911
Target:  5'- gCGACGGUCCUUCgucgagcucgcacUGCuGGuucAACAGCg -3'
miRNA:   3'- -GCUGCCGGGAAG-------------ACG-CCuccUUGUCG- -5'
30169 5' -57 NC_006273.1 + 125869 0.67 0.919107
Target:  5'- uCGACGGCCagcaUGCaGGAGGcACGcccGCg -3'
miRNA:   3'- -GCUGCCGGgaagACG-CCUCCuUGU---CG- -5'
30169 5' -57 NC_006273.1 + 31345 0.67 0.915806
Target:  5'- gGACGGCCaguacgccacgucUCUGCGGcggcuGGAcgaagagcuGCGGCa -3'
miRNA:   3'- gCUGCCGGga-----------AGACGCCu----CCU---------UGUCG- -5'
30169 5' -57 NC_006273.1 + 30456 0.67 0.915806
Target:  5'- cCGGCGGaugaggagGCGGAGG-ACAGCg -3'
miRNA:   3'- -GCUGCCgggaaga-CGCCUCCuUGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.