miRNA display CGI


Results 21 - 40 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 5' -57 NC_006273.1 + 160253 0.67 0.913561
Target:  5'- -aACGGCCUgucgUUGCGGAcugcacaaGGuAGCGGCg -3'
miRNA:   3'- gcUGCCGGGaa--GACGCCU--------CC-UUGUCG- -5'
30169 5' -57 NC_006273.1 + 8367 0.67 0.913561
Target:  5'- uGGCGGCaUCUagagacauggUUUGgGGGGGAccgGCGGCg -3'
miRNA:   3'- gCUGCCG-GGA----------AGACgCCUCCU---UGUCG- -5'
30169 5' -57 NC_006273.1 + 146417 0.67 0.913561
Target:  5'- uCGuCGuCCuCUUCUucGCGGAGGcGACGGCu -3'
miRNA:   3'- -GCuGCcGG-GAAGA--CGCCUCC-UUGUCG- -5'
30169 5' -57 NC_006273.1 + 147556 0.67 0.912994
Target:  5'- uGGCGGCg--UCgGCGGgagcagcGGGGGCGGCg -3'
miRNA:   3'- gCUGCCGggaAGaCGCC-------UCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 71852 0.67 0.907796
Target:  5'- -cACGGCC-----GgGGAGGAGCAGCu -3'
miRNA:   3'- gcUGCCGGgaagaCgCCUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 162201 0.67 0.907796
Target:  5'- uGAuCGGCCgCggugcgCUGCagccGGAGGaAGCGGCg -3'
miRNA:   3'- gCU-GCCGG-Gaa----GACG----CCUCC-UUGUCG- -5'
30169 5' -57 NC_006273.1 + 145613 0.67 0.907796
Target:  5'- gCGACGGUCUgggCgGCGGucguggugguGGGggUGGCg -3'
miRNA:   3'- -GCUGCCGGGaa-GaCGCC----------UCCuuGUCG- -5'
30169 5' -57 NC_006273.1 + 147957 0.67 0.901813
Target:  5'- --cCGaGCCCccgUCgcccgagGCGGAGGAGcCGGCg -3'
miRNA:   3'- gcuGC-CGGGa--AGa------CGCCUCCUU-GUCG- -5'
30169 5' -57 NC_006273.1 + 122830 0.67 0.898121
Target:  5'- cCGGCGGCCgCUgacGCGGcgaccgcgucagacGGGGCGGCg -3'
miRNA:   3'- -GCUGCCGG-GAagaCGCCu-------------CCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 126751 0.67 0.895616
Target:  5'- cCGGCaGGCCCUgacgCUGCGcgugguccaGAGGcGCGcGCa -3'
miRNA:   3'- -GCUG-CCGGGAa---GACGC---------CUCCuUGU-CG- -5'
30169 5' -57 NC_006273.1 + 194911 0.68 0.889207
Target:  5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3'
miRNA:   3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 234849 0.68 0.889207
Target:  5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3'
miRNA:   3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 44846 0.68 0.889207
Target:  5'- cCGACGGCCaaUCgcgugGCGuAGGAGUGGCg -3'
miRNA:   3'- -GCUGCCGGgaAGa----CGCcUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 18 0.68 0.889207
Target:  5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3'
miRNA:   3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 96139 0.68 0.875765
Target:  5'- uGACGuuucGCCCg--UGCuccGAGGAGCAGCg -3'
miRNA:   3'- gCUGC----CGGGaagACGc--CUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 104514 0.68 0.875765
Target:  5'- uCGGCGGCCgggUCgcGCGGcAGuGACAGCu -3'
miRNA:   3'- -GCUGCCGGga-AGa-CGCC-UCcUUGUCG- -5'
30169 5' -57 NC_006273.1 + 51625 0.68 0.86152
Target:  5'- gCGACGGCaggcUCgGCGGcGcGGACAGCa -3'
miRNA:   3'- -GCUGCCGgga-AGaCGCCuC-CUUGUCG- -5'
30169 5' -57 NC_006273.1 + 163000 0.68 0.851849
Target:  5'- aCGGCGGCag--CUGCGGcgguAGGAcacgcgggcgccggACAGCa -3'
miRNA:   3'- -GCUGCCGggaaGACGCC----UCCU--------------UGUCG- -5'
30169 5' -57 NC_006273.1 + 234917 0.69 0.846512
Target:  5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3'
miRNA:   3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 96026 0.69 0.846512
Target:  5'- cCGAgCGGCgCCaUCU-UGGAGGAGgGGCg -3'
miRNA:   3'- -GCU-GCCG-GGaAGAcGCCUCCUUgUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.