Results 21 - 40 of 70 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30169 | 5' | -57 | NC_006273.1 | + | 160253 | 0.67 | 0.913561 |
Target: 5'- -aACGGCCUgucgUUGCGGAcugcacaaGGuAGCGGCg -3' miRNA: 3'- gcUGCCGGGaa--GACGCCU--------CC-UUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 8367 | 0.67 | 0.913561 |
Target: 5'- uGGCGGCaUCUagagacauggUUUGgGGGGGAccgGCGGCg -3' miRNA: 3'- gCUGCCG-GGA----------AGACgCCUCCU---UGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 146417 | 0.67 | 0.913561 |
Target: 5'- uCGuCGuCCuCUUCUucGCGGAGGcGACGGCu -3' miRNA: 3'- -GCuGCcGG-GAAGA--CGCCUCC-UUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 147556 | 0.67 | 0.912994 |
Target: 5'- uGGCGGCg--UCgGCGGgagcagcGGGGGCGGCg -3' miRNA: 3'- gCUGCCGggaAGaCGCC-------UCCUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 71852 | 0.67 | 0.907796 |
Target: 5'- -cACGGCC-----GgGGAGGAGCAGCu -3' miRNA: 3'- gcUGCCGGgaagaCgCCUCCUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 162201 | 0.67 | 0.907796 |
Target: 5'- uGAuCGGCCgCggugcgCUGCagccGGAGGaAGCGGCg -3' miRNA: 3'- gCU-GCCGG-Gaa----GACG----CCUCC-UUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 145613 | 0.67 | 0.907796 |
Target: 5'- gCGACGGUCUgggCgGCGGucguggugguGGGggUGGCg -3' miRNA: 3'- -GCUGCCGGGaa-GaCGCC----------UCCuuGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 147957 | 0.67 | 0.901813 |
Target: 5'- --cCGaGCCCccgUCgcccgagGCGGAGGAGcCGGCg -3' miRNA: 3'- gcuGC-CGGGa--AGa------CGCCUCCUU-GUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 122830 | 0.67 | 0.898121 |
Target: 5'- cCGGCGGCCgCUgacGCGGcgaccgcgucagacGGGGCGGCg -3' miRNA: 3'- -GCUGCCGG-GAagaCGCCu-------------CCUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 126751 | 0.67 | 0.895616 |
Target: 5'- cCGGCaGGCCCUgacgCUGCGcgugguccaGAGGcGCGcGCa -3' miRNA: 3'- -GCUG-CCGGGAa---GACGC---------CUCCuUGU-CG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 194911 | 0.68 | 0.889207 |
Target: 5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3' miRNA: 3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 234849 | 0.68 | 0.889207 |
Target: 5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3' miRNA: 3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 44846 | 0.68 | 0.889207 |
Target: 5'- cCGACGGCCaaUCgcgugGCGuAGGAGUGGCg -3' miRNA: 3'- -GCUGCCGGgaAGa----CGCcUCCUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 18 | 0.68 | 0.889207 |
Target: 5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3' miRNA: 3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 96139 | 0.68 | 0.875765 |
Target: 5'- uGACGuuucGCCCg--UGCuccGAGGAGCAGCg -3' miRNA: 3'- gCUGC----CGGGaagACGc--CUCCUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 104514 | 0.68 | 0.875765 |
Target: 5'- uCGGCGGCCgggUCgcGCGGcAGuGACAGCu -3' miRNA: 3'- -GCUGCCGGga-AGa-CGCC-UCcUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 51625 | 0.68 | 0.86152 |
Target: 5'- gCGACGGCaggcUCgGCGGcGcGGACAGCa -3' miRNA: 3'- -GCUGCCGgga-AGaCGCCuC-CUUGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 163000 | 0.68 | 0.851849 |
Target: 5'- aCGGCGGCag--CUGCGGcgguAGGAcacgcgggcgccggACAGCa -3' miRNA: 3'- -GCUGCCGggaaGACGCC----UCCU--------------UGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 234917 | 0.69 | 0.846512 |
Target: 5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3' miRNA: 3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5' |
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30169 | 5' | -57 | NC_006273.1 | + | 96026 | 0.69 | 0.846512 |
Target: 5'- cCGAgCGGCgCCaUCU-UGGAGGAGgGGCg -3' miRNA: 3'- -GCU-GCCG-GGaAGAcGCCUCCUUgUCG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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