miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 5' -57 NC_006273.1 + 18 0.68 0.889207
Target:  5'- gCGGCGGUCggggUgUGuCGGGGGcGCGGCg -3'
miRNA:   3'- -GCUGCCGGga--AgAC-GCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 86 0.69 0.846512
Target:  5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3'
miRNA:   3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 1265 0.71 0.714971
Target:  5'- aCGGgGGCCUUUCgcgGCGGAcacggGGAacacagACGGCa -3'
miRNA:   3'- -GCUgCCGGGAAGa--CGCCU-----CCU------UGUCG- -5'
30169 5' -57 NC_006273.1 + 8367 0.67 0.913561
Target:  5'- uGGCGGCaUCUagagacauggUUUGgGGGGGAccgGCGGCg -3'
miRNA:   3'- gCUGCCG-GGA----------AGACgCCUCCU---UGUCG- -5'
30169 5' -57 NC_006273.1 + 21945 0.78 0.364539
Target:  5'- aGACGGCgCUagcggcgcuaucaUCUGCGGAGGGAUuacuGGCu -3'
miRNA:   3'- gCUGCCGgGA-------------AGACGCCUCCUUG----UCG- -5'
30169 5' -57 NC_006273.1 + 22152 0.74 0.539689
Target:  5'- gCGGCGGCCgUcUCUGaGGAaGAGCAGCa -3'
miRNA:   3'- -GCUGCCGGgA-AGACgCCUcCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 24940 0.66 0.929539
Target:  5'- -cGCGGCCCUggcuuggcccCUGCGGcugcuuuuGGGcuucuACAGCa -3'
miRNA:   3'- gcUGCCGGGAa---------GACGCC--------UCCu----UGUCG- -5'
30169 5' -57 NC_006273.1 + 30456 0.67 0.915806
Target:  5'- cCGGCGGaugaggagGCGGAGG-ACAGCg -3'
miRNA:   3'- -GCUGCCgggaaga-CGCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 31345 0.67 0.915806
Target:  5'- gGACGGCCaguacgccacgucUCUGCGGcggcuGGAcgaagagcuGCGGCa -3'
miRNA:   3'- gCUGCCGGga-----------AGACGCCu----CCU---------UGUCG- -5'
30169 5' -57 NC_006273.1 + 37393 0.69 0.838736
Target:  5'- uGGCGGCUuaugUUUCUGgGGuGGGcgcgACGGCa -3'
miRNA:   3'- gCUGCCGG----GAAGACgCCuCCU----UGUCG- -5'
30169 5' -57 NC_006273.1 + 38404 0.72 0.695729
Target:  5'- cCGcCGGCgCCUccguacggCUGCGGAGGuauagucACAGCa -3'
miRNA:   3'- -GCuGCCG-GGAa-------GACGCCUCCu------UGUCG- -5'
30169 5' -57 NC_006273.1 + 39577 0.66 0.929539
Target:  5'- -cGCGGCCgCgacCgagggGCGGGGGGcGCGGCg -3'
miRNA:   3'- gcUGCCGG-Gaa-Ga----CGCCUCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 40024 0.69 0.846512
Target:  5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3'
miRNA:   3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 40496 0.71 0.743324
Target:  5'- aGGCGGCCCggCUGCuGccGGACAGg -3'
miRNA:   3'- gCUGCCGGGaaGACGcCucCUUGUCg -5'
30169 5' -57 NC_006273.1 + 41203 0.71 0.714971
Target:  5'- aCGGgGGCCUUUCgcgGCGGAcacggGGAacacagACGGCa -3'
miRNA:   3'- -GCUgCCGGGAAGa--CGCCU-----CCU------UGUCG- -5'
30169 5' -57 NC_006273.1 + 41260 0.66 0.929539
Target:  5'- uCGACGGCCUccgagggGUGGuGGAcACGGUg -3'
miRNA:   3'- -GCUGCCGGGaaga---CGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 44846 0.68 0.889207
Target:  5'- cCGACGGCCaaUCgcgugGCGuAGGAGUGGCg -3'
miRNA:   3'- -GCUGCCGGgaAGa----CGCcUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 51625 0.68 0.86152
Target:  5'- gCGACGGCaggcUCgGCGGcGcGGACAGCa -3'
miRNA:   3'- -GCUGCCGgga-AGaCGCCuC-CUUGUCG- -5'
30169 5' -57 NC_006273.1 + 67446 0.77 0.430496
Target:  5'- -cACGGUaaCUUCUGUGGAGGAcguGCAGCg -3'
miRNA:   3'- gcUGCCGg-GAAGACGCCUCCU---UGUCG- -5'
30169 5' -57 NC_006273.1 + 68010 0.66 0.943535
Target:  5'- cCGGCGGCgUcaugggugGCGGAGGAcugcCGGCa -3'
miRNA:   3'- -GCUGCCGgGaaga----CGCCUCCUu---GUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.