miRNA display CGI


Results 1 - 20 of 70 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30169 5' -57 NC_006273.1 + 51625 0.68 0.86152
Target:  5'- gCGACGGCaggcUCgGCGGcGcGGACAGCa -3'
miRNA:   3'- -GCUGCCGgga-AGaCGCCuC-CUUGUCG- -5'
30169 5' -57 NC_006273.1 + 105027 0.71 0.724498
Target:  5'- aCGGaucaGGCCUcgCUgGUGGAGGuGCAGCg -3'
miRNA:   3'- -GCUg---CCGGGaaGA-CGCCUCCuUGUCG- -5'
30169 5' -57 NC_006273.1 + 40496 0.71 0.743324
Target:  5'- aGGCGGCCCggCUGCuGccGGACAGg -3'
miRNA:   3'- gCUGCCGGGaaGACGcCucCUUGUCg -5'
30169 5' -57 NC_006273.1 + 105147 0.7 0.761792
Target:  5'- cCGGCGGUCgUUCa--GGGGGAaaGCGGCg -3'
miRNA:   3'- -GCUGCCGGgAAGacgCCUCCU--UGUCG- -5'
30169 5' -57 NC_006273.1 + 162371 0.7 0.792178
Target:  5'- gCGGCGGCgCUagugguggcgguggCgGCGGcGGGAGCGGCg -3'
miRNA:   3'- -GCUGCCGgGAa-------------GaCGCC-UCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 221803 0.7 0.797389
Target:  5'- aCGGCGGCCCgggCcGCccGGcGGGugAGCa -3'
miRNA:   3'- -GCUGCCGGGaa-GaCG--CCuCCUugUCG- -5'
30169 5' -57 NC_006273.1 + 86 0.69 0.846512
Target:  5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3'
miRNA:   3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 234917 0.69 0.846512
Target:  5'- gCGACGGCgaCUaguugcgugugCUGCGGuGGGuACGGCg -3'
miRNA:   3'- -GCUGCCGg-GAa----------GACGCCuCCU-UGUCG- -5'
30169 5' -57 NC_006273.1 + 96026 0.69 0.846512
Target:  5'- cCGAgCGGCgCCaUCU-UGGAGGAGgGGCg -3'
miRNA:   3'- -GCU-GCCG-GGaAGAcGCCUCCUUgUCG- -5'
30169 5' -57 NC_006273.1 + 1265 0.71 0.714971
Target:  5'- aCGGgGGCCUUUCgcgGCGGAcacggGGAacacagACGGCa -3'
miRNA:   3'- -GCUgCCGGGAAGa--CGCCU-----CCU------UGUCG- -5'
30169 5' -57 NC_006273.1 + 233297 0.72 0.695729
Target:  5'- cCGcCGGCgCCUccguacggCUGCGGAGGuauagucACAGCa -3'
miRNA:   3'- -GCuGCCG-GGAa-------GACGCCUCCu------UGUCG- -5'
30169 5' -57 NC_006273.1 + 99832 0.72 0.695729
Target:  5'- gCGACGGUggCUgg-GCgGGAGGAGCGGCg -3'
miRNA:   3'- -GCUGCCGg-GAagaCG-CCUCCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 21945 0.78 0.364539
Target:  5'- aGACGGCgCUagcggcgcuaucaUCUGCGGAGGGAUuacuGGCu -3'
miRNA:   3'- gCUGCCGgGA-------------AGACGCCUCCUUG----UCG- -5'
30169 5' -57 NC_006273.1 + 67446 0.77 0.430496
Target:  5'- -cACGGUaaCUUCUGUGGAGGAcguGCAGCg -3'
miRNA:   3'- gcUGCCGg-GAAGACGCCUCCU---UGUCG- -5'
30169 5' -57 NC_006273.1 + 114097 0.76 0.463757
Target:  5'- gCGGCGGugguggguaugucCCCUUCUGUGGAGGAGacuaccuCAGUc -3'
miRNA:   3'- -GCUGCC-------------GGGAAGACGCCUCCUU-------GUCG- -5'
30169 5' -57 NC_006273.1 + 189074 0.76 0.464651
Target:  5'- aGGCGGCCgCUUCUugcgcccgggcgGCGGAGGuggcuuccaggauGGCGGCg -3'
miRNA:   3'- gCUGCCGG-GAAGA------------CGCCUCC-------------UUGUCG- -5'
30169 5' -57 NC_006273.1 + 22152 0.74 0.539689
Target:  5'- gCGGCGGCCgUcUCUGaGGAaGAGCAGCa -3'
miRNA:   3'- -GCUGCCGGgA-AGACgCCUcCUUGUCG- -5'
30169 5' -57 NC_006273.1 + 231172 0.74 0.558886
Target:  5'- gGugGGUCCgagCUGCGGuauGGGucACGGCg -3'
miRNA:   3'- gCugCCGGGaa-GACGCCu--CCU--UGUCG- -5'
30169 5' -57 NC_006273.1 + 145750 0.74 0.568557
Target:  5'- -uGCGGCUCUgcgguaguggCUGCGGGGGAaacgACAGUa -3'
miRNA:   3'- gcUGCCGGGAa---------GACGCCUCCU----UGUCG- -5'
30169 5' -57 NC_006273.1 + 138161 0.72 0.646901
Target:  5'- gCGGCGGCCaCggcCUGCGGGcaggcGGGuuGCAGCu -3'
miRNA:   3'- -GCUGCCGG-Gaa-GACGCCU-----CCU--UGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.