miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 3' -58.4 NC_006273.1 + 82023 0.66 0.913158
Target:  5'- gGGCACgcgcgugccgccggCCUCGGACgaagCGgCAGCGGc -3'
miRNA:   3'- -UCGUGa-------------GGAGCCUGag--GCgGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 228078 0.66 0.910887
Target:  5'- --gACUaCCUCuGAC-CCGCCAACGaGAa -3'
miRNA:   3'- ucgUGA-GGAGcCUGaGGCGGUUGC-CU- -5'
30170 3' -58.4 NC_006273.1 + 43325 0.66 0.910887
Target:  5'- aAGCGuCgucgCCcCGGACUgCGCCcGCGGu -3'
miRNA:   3'- -UCGU-Ga---GGaGCCUGAgGCGGuUGCCu -5'
30170 3' -58.4 NC_006273.1 + 141665 0.66 0.910887
Target:  5'- cGCACUucggUCUCGGGCUCgcucgGCCucgcuCGGAa -3'
miRNA:   3'- uCGUGA----GGAGCCUGAGg----CGGuu---GCCU- -5'
30170 3' -58.4 NC_006273.1 + 152405 0.66 0.910887
Target:  5'- cAGCAgCUUgUCGcGCUCauaaGCCAGCGGu -3'
miRNA:   3'- -UCGU-GAGgAGCcUGAGg---CGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 78682 0.66 0.910887
Target:  5'- gGGCcggGgUCCgCGGGCaCCGCCGcCGGAg -3'
miRNA:   3'- -UCG---UgAGGaGCCUGaGGCGGUuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 46104 0.66 0.910313
Target:  5'- cAGCAUUCCUgCGGGCagaacccUCCGucuCCAACGa- -3'
miRNA:   3'- -UCGUGAGGA-GCCUG-------AGGC---GGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 206204 0.66 0.907414
Target:  5'- cAGCGCgCCUCGGAauacucuacucgguaCUCCGaaaCAuCGGGc -3'
miRNA:   3'- -UCGUGaGGAGCCU---------------GAGGCg--GUuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 233290 0.66 0.905057
Target:  5'- cGCGCUCCcgcCGGcgcCUCCGUacggcuGCGGAg -3'
miRNA:   3'- uCGUGAGGa--GCCu--GAGGCGgu----UGCCU- -5'
30170 3' -58.4 NC_006273.1 + 38397 0.66 0.905057
Target:  5'- cGCGCUCCcgcCGGcgcCUCCGUacggcuGCGGAg -3'
miRNA:   3'- uCGUGAGGa--GCCu--GAGGCGgu----UGCCU- -5'
30170 3' -58.4 NC_006273.1 + 161635 0.66 0.899014
Target:  5'- cGGCGCcgcugccgggCCUCGGcCgccgCCGCCAcccauggcGCGGGg -3'
miRNA:   3'- -UCGUGa---------GGAGCCuGa---GGCGGU--------UGCCU- -5'
30170 3' -58.4 NC_006273.1 + 214953 0.66 0.886297
Target:  5'- uGGCACcguaggCGGAacagCUGCCAGCGGAc -3'
miRNA:   3'- -UCGUGagga--GCCUga--GGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 188585 0.66 0.878952
Target:  5'- uGCACgcugaugUCCUCGGGCUUaaCGCCGguuugcgcgcGCGGc -3'
miRNA:   3'- uCGUG-------AGGAGCCUGAG--GCGGU----------UGCCu -5'
30170 3' -58.4 NC_006273.1 + 118310 0.67 0.872762
Target:  5'- uAGCGCagCUUGGGCagUCGCUcACGGAu -3'
miRNA:   3'- -UCGUGagGAGCCUGa-GGCGGuUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 142192 0.67 0.865698
Target:  5'- cAGCgACcCCUCGGACagCGUgAGCGGc -3'
miRNA:   3'- -UCG-UGaGGAGCCUGagGCGgUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 87083 0.67 0.865698
Target:  5'- cGCGUUUCUCuugaacggcguGGACUCCGCCAGuaacacguuCGGAu -3'
miRNA:   3'- uCGUGAGGAG-----------CCUGAGGCGGUU---------GCCU- -5'
30170 3' -58.4 NC_006273.1 + 94556 0.67 0.865698
Target:  5'- -cCGCUCCUcccCGGGCUCCGgCC--CGGGa -3'
miRNA:   3'- ucGUGAGGA---GCCUGAGGC-GGuuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 129917 0.67 0.850246
Target:  5'- cAGCGuCUCCUgCGGcgccgACUCCuuguagcGCCGACGGu -3'
miRNA:   3'- -UCGU-GAGGA-GCC-----UGAGG-------CGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 188857 0.67 0.843377
Target:  5'- uGCGCggcagUCUCGGAUUCCGCgGugGc- -3'
miRNA:   3'- uCGUGa----GGAGCCUGAGGCGgUugCcu -5'
30170 3' -58.4 NC_006273.1 + 165551 0.67 0.835579
Target:  5'- gGGCACUCCgcggGGACUuucUCGgCGGCGGu -3'
miRNA:   3'- -UCGUGAGGag--CCUGA---GGCgGUUGCCu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.