Results 1 - 20 of 46 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
30170 | 3' | -58.4 | NC_006273.1 | + | 162415 | 1.08 | 0.003329 |
Target: 5'- cAGCACUCCUCGGACUCCGCCAACGGAc -3' miRNA: 3'- -UCGUGAGGAGCCUGAGGCGGUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 34275 | 0.72 | 0.576089 |
Target: 5'- cGCGCUCCUCGGGCUCCagaAACaGGc -3' miRNA: 3'- uCGUGAGGAGCCUGAGGcggUUGcCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 153051 | 0.71 | 0.6345 |
Target: 5'- uGCAgaacCUCUUucccuaucUGGugUCCGCCGACGGGa -3' miRNA: 3'- uCGU----GAGGA--------GCCugAGGCGGUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 30554 | 0.71 | 0.670577 |
Target: 5'- cAGCGuCUCCUCGGacGCUCCGUCGuccuucgagcucguGCGcGAg -3' miRNA: 3'- -UCGU-GAGGAGCC--UGAGGCGGU--------------UGC-CU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 30677 | 0.7 | 0.702435 |
Target: 5'- gGGCGCgCCUCGGGgcUCGCCGGCGa- -3' miRNA: 3'- -UCGUGaGGAGCCUgaGGCGGUUGCcu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 151701 | 0.7 | 0.711985 |
Target: 5'- cGGUugUCCUCca---CCGCCAGCGGAc -3' miRNA: 3'- -UCGugAGGAGccugaGGCGGUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 196903 | 0.7 | 0.730893 |
Target: 5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3' miRNA: 3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 2010 | 0.7 | 0.730893 |
Target: 5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3' miRNA: 3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 199575 | 0.69 | 0.740234 |
Target: 5'- cGGCGCUUCUCGuGcCUgCGCCAgGCGGc -3' miRNA: 3'- -UCGUGAGGAGC-CuGAgGCGGU-UGCCu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 153769 | 0.69 | 0.740234 |
Target: 5'- gAGCGCaaggccgCUUCGGcCUCCGCC-GCGGc -3' miRNA: 3'- -UCGUGa------GGAGCCuGAGGCGGuUGCCu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 103006 | 0.69 | 0.749489 |
Target: 5'- cGGaCGCUCCUcCGGACgaaaCGCCGcgGCGGc -3' miRNA: 3'- -UC-GUGAGGA-GCCUGag--GCGGU--UGCCu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 177679 | 0.69 | 0.758651 |
Target: 5'- cGCGCcUCUCGGAg-CCGCCGACGc- -3' miRNA: 3'- uCGUGaGGAGCCUgaGGCGGUUGCcu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 196614 | 0.69 | 0.76771 |
Target: 5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3' miRNA: 3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 1722 | 0.69 | 0.76771 |
Target: 5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3' miRNA: 3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 102124 | 0.69 | 0.76771 |
Target: 5'- cGGCA-UCCUCGGGCuuUCCGgCCAACa-- -3' miRNA: 3'- -UCGUgAGGAGCCUG--AGGC-GGUUGccu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 141034 | 0.69 | 0.774878 |
Target: 5'- uGGUGCUCCagggcggugggaCGGGC-CCGCgGACGGAc -3' miRNA: 3'- -UCGUGAGGa-----------GCCUGaGGCGgUUGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 226546 | 0.69 | 0.776659 |
Target: 5'- gGGUccGCUCUgagcCGG-CUCCGCCGuCGGAa -3' miRNA: 3'- -UCG--UGAGGa---GCCuGAGGCGGUuGCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 97962 | 0.69 | 0.78549 |
Target: 5'- gAGCACgcacaCCUCGGGCUgCgagaGCCAACGu- -3' miRNA: 3'- -UCGUGa----GGAGCCUGAgG----CGGUUGCcu -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 141147 | 0.68 | 0.801065 |
Target: 5'- cAGCACggCCggaacccugccgCGGACUgCGCCGGgGGGc -3' miRNA: 3'- -UCGUGa-GGa-----------GCCUGAgGCGGUUgCCU- -5' |
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30170 | 3' | -58.4 | NC_006273.1 | + | 54018 | 0.68 | 0.8112 |
Target: 5'- uAGCGgaCCgugagCGGACgUCaCGCCGGCGGu -3' miRNA: 3'- -UCGUgaGGa----GCCUG-AG-GCGGUUGCCu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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