miRNA display CGI


Results 21 - 40 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 3' -58.4 NC_006273.1 + 112978 0.67 0.835579
Target:  5'- cGCGaUCCgcCGGACUCCGUgaCGGCGGu -3'
miRNA:   3'- uCGUgAGGa-GCCUGAGGCG--GUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 165551 0.67 0.835579
Target:  5'- gGGCACUCCgcggGGACUuucUCGgCGGCGGu -3'
miRNA:   3'- -UCGUGAGGag--CCUGA---GGCgGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 135443 0.67 0.835579
Target:  5'- cGCGCUCgUCuccacgcucgaGGGCUCCGUCugcgucaaGACGGGc -3'
miRNA:   3'- uCGUGAGgAG-----------CCUGAGGCGG--------UUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 85201 0.68 0.819484
Target:  5'- cGCGCUCCUCGaGCcaagUUGCCGACGa- -3'
miRNA:   3'- uCGUGAGGAGCcUGa---GGCGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 133387 0.68 0.819484
Target:  5'- aGGCGCUggaggCCUUGGAucCUCCGCCGccGCGc- -3'
miRNA:   3'- -UCGUGA-----GGAGCCU--GAGGCGGU--UGCcu -5'
30170 3' -58.4 NC_006273.1 + 186793 0.68 0.8112
Target:  5'- cGGCACauuauUCC-CGG-CgCCGCCAACGGc -3'
miRNA:   3'- -UCGUG-----AGGaGCCuGaGGCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 54018 0.68 0.8112
Target:  5'- uAGCGgaCCgugagCGGACgUCaCGCCGGCGGu -3'
miRNA:   3'- -UCGUgaGGa----GCCUG-AG-GCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 141147 0.68 0.801065
Target:  5'- cAGCACggCCggaacccugccgCGGACUgCGCCGGgGGGc -3'
miRNA:   3'- -UCGUGa-GGa-----------GCCUGAgGCGGUUgCCU- -5'
30170 3' -58.4 NC_006273.1 + 97962 0.69 0.78549
Target:  5'- gAGCACgcacaCCUCGGGCUgCgagaGCCAACGu- -3'
miRNA:   3'- -UCGUGa----GGAGCCUGAgG----CGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 226546 0.69 0.776659
Target:  5'- gGGUccGCUCUgagcCGG-CUCCGCCGuCGGAa -3'
miRNA:   3'- -UCG--UGAGGa---GCCuGAGGCGGUuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 141034 0.69 0.774878
Target:  5'- uGGUGCUCCagggcggugggaCGGGC-CCGCgGACGGAc -3'
miRNA:   3'- -UCGUGAGGa-----------GCCUGaGGCGgUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 1722 0.69 0.76771
Target:  5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3'
miRNA:   3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 196614 0.69 0.76771
Target:  5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3'
miRNA:   3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 102124 0.69 0.76771
Target:  5'- cGGCA-UCCUCGGGCuuUCCGgCCAACa-- -3'
miRNA:   3'- -UCGUgAGGAGCCUG--AGGC-GGUUGccu -5'
30170 3' -58.4 NC_006273.1 + 177679 0.69 0.758651
Target:  5'- cGCGCcUCUCGGAg-CCGCCGACGc- -3'
miRNA:   3'- uCGUGaGGAGCCUgaGGCGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 103006 0.69 0.749489
Target:  5'- cGGaCGCUCCUcCGGACgaaaCGCCGcgGCGGc -3'
miRNA:   3'- -UC-GUGAGGA-GCCUGag--GCGGU--UGCCu -5'
30170 3' -58.4 NC_006273.1 + 199575 0.69 0.740234
Target:  5'- cGGCGCUUCUCGuGcCUgCGCCAgGCGGc -3'
miRNA:   3'- -UCGUGAGGAGC-CuGAgGCGGU-UGCCu -5'
30170 3' -58.4 NC_006273.1 + 153769 0.69 0.740234
Target:  5'- gAGCGCaaggccgCUUCGGcCUCCGCC-GCGGc -3'
miRNA:   3'- -UCGUGa------GGAGCCuGAGGCGGuUGCCu -5'
30170 3' -58.4 NC_006273.1 + 2010 0.7 0.730893
Target:  5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3'
miRNA:   3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 196903 0.7 0.730893
Target:  5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3'
miRNA:   3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.