miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 3' -58.4 NC_006273.1 + 1722 0.69 0.76771
Target:  5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3'
miRNA:   3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 2010 0.7 0.730893
Target:  5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3'
miRNA:   3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 30554 0.71 0.670577
Target:  5'- cAGCGuCUCCUCGGacGCUCCGUCGuccuucgagcucguGCGcGAg -3'
miRNA:   3'- -UCGU-GAGGAGCC--UGAGGCGGU--------------UGC-CU- -5'
30170 3' -58.4 NC_006273.1 + 30677 0.7 0.702435
Target:  5'- gGGCGCgCCUCGGGgcUCGCCGGCGa- -3'
miRNA:   3'- -UCGUGaGGAGCCUgaGGCGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 34275 0.72 0.576089
Target:  5'- cGCGCUCCUCGGGCUCCagaAACaGGc -3'
miRNA:   3'- uCGUGAGGAGCCUGAGGcggUUGcCU- -5'
30170 3' -58.4 NC_006273.1 + 38397 0.66 0.905057
Target:  5'- cGCGCUCCcgcCGGcgcCUCCGUacggcuGCGGAg -3'
miRNA:   3'- uCGUGAGGa--GCCu--GAGGCGgu----UGCCU- -5'
30170 3' -58.4 NC_006273.1 + 43325 0.66 0.910887
Target:  5'- aAGCGuCgucgCCcCGGACUgCGCCcGCGGu -3'
miRNA:   3'- -UCGU-Ga---GGaGCCUGAgGCGGuUGCCu -5'
30170 3' -58.4 NC_006273.1 + 46104 0.66 0.910313
Target:  5'- cAGCAUUCCUgCGGGCagaacccUCCGucuCCAACGa- -3'
miRNA:   3'- -UCGUGAGGA-GCCUG-------AGGC---GGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 54018 0.68 0.8112
Target:  5'- uAGCGgaCCgugagCGGACgUCaCGCCGGCGGu -3'
miRNA:   3'- -UCGUgaGGa----GCCUG-AG-GCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 78682 0.66 0.910887
Target:  5'- gGGCcggGgUCCgCGGGCaCCGCCGcCGGAg -3'
miRNA:   3'- -UCG---UgAGGaGCCUGaGGCGGUuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 82023 0.66 0.913158
Target:  5'- gGGCACgcgcgugccgccggCCUCGGACgaagCGgCAGCGGc -3'
miRNA:   3'- -UCGUGa-------------GGAGCCUGag--GCgGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 85201 0.68 0.819484
Target:  5'- cGCGCUCCUCGaGCcaagUUGCCGACGa- -3'
miRNA:   3'- uCGUGAGGAGCcUGa---GGCGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 87083 0.67 0.865698
Target:  5'- cGCGUUUCUCuugaacggcguGGACUCCGCCAGuaacacguuCGGAu -3'
miRNA:   3'- uCGUGAGGAG-----------CCUGAGGCGGUU---------GCCU- -5'
30170 3' -58.4 NC_006273.1 + 94556 0.67 0.865698
Target:  5'- -cCGCUCCUcccCGGGCUCCGgCC--CGGGa -3'
miRNA:   3'- ucGUGAGGA---GCCUGAGGC-GGuuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 97962 0.69 0.78549
Target:  5'- gAGCACgcacaCCUCGGGCUgCgagaGCCAACGu- -3'
miRNA:   3'- -UCGUGa----GGAGCCUGAgG----CGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 102124 0.69 0.76771
Target:  5'- cGGCA-UCCUCGGGCuuUCCGgCCAACa-- -3'
miRNA:   3'- -UCGUgAGGAGCCUG--AGGC-GGUUGccu -5'
30170 3' -58.4 NC_006273.1 + 103006 0.69 0.749489
Target:  5'- cGGaCGCUCCUcCGGACgaaaCGCCGcgGCGGc -3'
miRNA:   3'- -UC-GUGAGGA-GCCUGag--GCGGU--UGCCu -5'
30170 3' -58.4 NC_006273.1 + 112978 0.67 0.835579
Target:  5'- cGCGaUCCgcCGGACUCCGUgaCGGCGGu -3'
miRNA:   3'- uCGUgAGGa-GCCUGAGGCG--GUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 118310 0.67 0.872762
Target:  5'- uAGCGCagCUUGGGCagUCGCUcACGGAu -3'
miRNA:   3'- -UCGUGagGAGCCUGa-GGCGGuUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 121791 0.67 0.835579
Target:  5'- gGGCAggUgUCGGugUuugcgcucggCCGCCGACGGGu -3'
miRNA:   3'- -UCGUgaGgAGCCugA----------GGCGGUUGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.