miRNA display CGI


Results 1 - 20 of 46 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 3' -58.4 NC_006273.1 + 206204 0.66 0.907414
Target:  5'- cAGCGCgCCUCGGAauacucuacucgguaCUCCGaaaCAuCGGGc -3'
miRNA:   3'- -UCGUGaGGAGCCU---------------GAGGCg--GUuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 135443 0.67 0.835579
Target:  5'- cGCGCUCgUCuccacgcucgaGGGCUCCGUCugcgucaaGACGGGc -3'
miRNA:   3'- uCGUGAGgAG-----------CCUGAGGCGG--------UUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 165551 0.67 0.835579
Target:  5'- gGGCACUCCgcggGGACUuucUCGgCGGCGGu -3'
miRNA:   3'- -UCGUGAGGag--CCUGA---GGCgGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 112978 0.67 0.835579
Target:  5'- cGCGaUCCgcCGGACUCCGUgaCGGCGGu -3'
miRNA:   3'- uCGUgAGGa-GCCUGAGGCG--GUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 188857 0.67 0.843377
Target:  5'- uGCGCggcagUCUCGGAUUCCGCgGugGc- -3'
miRNA:   3'- uCGUGa----GGAGCCUGAGGCGgUugCcu -5'
30170 3' -58.4 NC_006273.1 + 142192 0.67 0.865698
Target:  5'- cAGCgACcCCUCGGACagCGUgAGCGGc -3'
miRNA:   3'- -UCG-UGaGGAGCCUGagGCGgUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 87083 0.67 0.865698
Target:  5'- cGCGUUUCUCuugaacggcguGGACUCCGCCAGuaacacguuCGGAu -3'
miRNA:   3'- uCGUGAGGAG-----------CCUGAGGCGGUU---------GCCU- -5'
30170 3' -58.4 NC_006273.1 + 94556 0.67 0.865698
Target:  5'- -cCGCUCCUcccCGGGCUCCGgCC--CGGGa -3'
miRNA:   3'- ucGUGAGGA---GCCUGAGGC-GGuuGCCU- -5'
30170 3' -58.4 NC_006273.1 + 233290 0.66 0.905057
Target:  5'- cGCGCUCCcgcCGGcgcCUCCGUacggcuGCGGAg -3'
miRNA:   3'- uCGUGAGGa--GCCu--GAGGCGgu----UGCCU- -5'
30170 3' -58.4 NC_006273.1 + 121791 0.67 0.835579
Target:  5'- gGGCAggUgUCGGugUuugcgcucggCCGCCGACGGGu -3'
miRNA:   3'- -UCGUgaGgAGCCugA----------GGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 133387 0.68 0.819484
Target:  5'- aGGCGCUggaggCCUUGGAucCUCCGCCGccGCGc- -3'
miRNA:   3'- -UCGUGA-----GGAGCCU--GAGGCGGU--UGCcu -5'
30170 3' -58.4 NC_006273.1 + 54018 0.68 0.8112
Target:  5'- uAGCGgaCCgugagCGGACgUCaCGCCGGCGGu -3'
miRNA:   3'- -UCGUgaGGa----GCCUG-AG-GCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 34275 0.72 0.576089
Target:  5'- cGCGCUCCUCGGGCUCCagaAACaGGc -3'
miRNA:   3'- uCGUGAGGAGCCUGAGGcggUUGcCU- -5'
30170 3' -58.4 NC_006273.1 + 30554 0.71 0.670577
Target:  5'- cAGCGuCUCCUCGGacGCUCCGUCGuccuucgagcucguGCGcGAg -3'
miRNA:   3'- -UCGU-GAGGAGCC--UGAGGCGGU--------------UGC-CU- -5'
30170 3' -58.4 NC_006273.1 + 30677 0.7 0.702435
Target:  5'- gGGCGCgCCUCGGGgcUCGCCGGCGa- -3'
miRNA:   3'- -UCGUGaGGAGCCUgaGGCGGUUGCcu -5'
30170 3' -58.4 NC_006273.1 + 151701 0.7 0.711985
Target:  5'- cGGUugUCCUCca---CCGCCAGCGGAc -3'
miRNA:   3'- -UCGugAGGAGccugaGGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 196903 0.7 0.730893
Target:  5'- cGGCACggagaCGGAggCCGCCGGCGGGg -3'
miRNA:   3'- -UCGUGagga-GCCUgaGGCGGUUGCCU- -5'
30170 3' -58.4 NC_006273.1 + 153769 0.69 0.740234
Target:  5'- gAGCGCaaggccgCUUCGGcCUCCGCC-GCGGc -3'
miRNA:   3'- -UCGUGa------GGAGCCuGAGGCGGuUGCCu -5'
30170 3' -58.4 NC_006273.1 + 196614 0.69 0.76771
Target:  5'- cGGCGCUCggaCGGgaGCUgCGCCGGCGGu -3'
miRNA:   3'- -UCGUGAGga-GCC--UGAgGCGGUUGCCu -5'
30170 3' -58.4 NC_006273.1 + 226546 0.69 0.776659
Target:  5'- gGGUccGCUCUgagcCGG-CUCCGCCGuCGGAa -3'
miRNA:   3'- -UCG--UGAGGa---GCCuGAGGCGGUuGCCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.