miRNA display CGI


Results 1 - 20 of 39 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 5' -54.3 NC_006273.1 + 127086 0.66 0.987688
Target:  5'- -gCCCGGUUGuUGGucaugGCgGGCAuGAGGc -3'
miRNA:   3'- agGGGCCAACuACU-----UGgCCGUcUUCC- -5'
30170 5' -54.3 NC_006273.1 + 184414 0.66 0.986152
Target:  5'- aUCCCGGUgucuAUGucgGCCGGCGGugcuGGc -3'
miRNA:   3'- aGGGGCCAac--UACu--UGGCCGUCuu--CC- -5'
30170 5' -54.3 NC_006273.1 + 211991 0.66 0.986152
Target:  5'- gUCCUCGGUgcguaaccgcUGGUaucGAugCGGCAGgcGa -3'
miRNA:   3'- -AGGGGCCA----------ACUA---CUugGCCGUCuuCc -5'
30170 5' -54.3 NC_006273.1 + 80791 0.66 0.986152
Target:  5'- cUCCCCcucc-GUGAGCCuGGaCGGAGGGg -3'
miRNA:   3'- -AGGGGccaacUACUUGG-CC-GUCUUCC- -5'
30170 5' -54.3 NC_006273.1 + 166226 0.66 0.984473
Target:  5'- aUCCCC-GUUGuugGAGgUGGUAGAAGu -3'
miRNA:   3'- -AGGGGcCAACua-CUUgGCCGUCUUCc -5'
30170 5' -54.3 NC_006273.1 + 38126 0.66 0.984473
Target:  5'- cUCCCCGGcgcgcucGGGCCGGCG--AGGc -3'
miRNA:   3'- -AGGGGCCaacua--CUUGGCCGUcuUCC- -5'
30170 5' -54.3 NC_006273.1 + 147967 0.66 0.982643
Target:  5'- gUCgCCCGaGgcgGAgGAGCCGGCGGcggcgguggugGAGGa -3'
miRNA:   3'- -AG-GGGC-Caa-CUaCUUGGCCGUC-----------UUCC- -5'
30170 5' -54.3 NC_006273.1 + 94834 0.66 0.982643
Target:  5'- ---aCGGUaGGUGGGCCGGguGGAcGGu -3'
miRNA:   3'- agggGCCAaCUACUUGGCCguCUU-CC- -5'
30170 5' -54.3 NC_006273.1 + 114143 0.66 0.982643
Target:  5'- --aCCuGUUGAUGAACgGGCAGcaaaucuuccugGAGGu -3'
miRNA:   3'- aggGGcCAACUACUUGgCCGUC------------UUCC- -5'
30170 5' -54.3 NC_006273.1 + 95578 0.66 0.982643
Target:  5'- aCCCCGGcgGAccccgGAGaccugaCGGCAGuuGAGGg -3'
miRNA:   3'- aGGGGCCaaCUa----CUUg-----GCCGUC--UUCC- -5'
30170 5' -54.3 NC_006273.1 + 99991 0.66 0.980656
Target:  5'- cUCCCCGcuGUUGucc-GCCGGCAGu-GGc -3'
miRNA:   3'- -AGGGGC--CAACuacuUGGCCGUCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 140840 0.67 0.978504
Target:  5'- -gCCCGGg-GAgGAGCgGGguGggGGu -3'
miRNA:   3'- agGGGCCaaCUaCUUGgCCguCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 230477 0.67 0.978504
Target:  5'- gCCCCGGcgGgcGAAUCGGcCGGcuGGu -3'
miRNA:   3'- aGGGGCCaaCuaCUUGGCC-GUCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 105960 0.67 0.978504
Target:  5'- gUCCuaGGg-GGUGAcugcccACCGGCAGAuAGGu -3'
miRNA:   3'- -AGGggCCaaCUACU------UGGCCGUCU-UCC- -5'
30170 5' -54.3 NC_006273.1 + 140361 0.67 0.976179
Target:  5'- cCCCCGGUcac--GACUGGCGGccGGa -3'
miRNA:   3'- aGGGGCCAacuacUUGGCCGUCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 183905 0.67 0.976179
Target:  5'- gCCgCCGGUcgUGGUGAaggaugugauguACaCGGCcgGGGAGGg -3'
miRNA:   3'- aGG-GGCCA--ACUACU------------UG-GCCG--UCUUCC- -5'
30170 5' -54.3 NC_006273.1 + 20633 0.67 0.976179
Target:  5'- aCCgCCGGcacccacGGUGcuCCGGCAGAacgAGGa -3'
miRNA:   3'- aGG-GGCCaa-----CUACuuGGCCGUCU---UCC- -5'
30170 5' -54.3 NC_006273.1 + 170818 0.67 0.975937
Target:  5'- gCCCUGGUggcagcuggccUGuGUGAcuuucauggcgagGCCGGCGGcAGGGa -3'
miRNA:   3'- aGGGGCCA-----------AC-UACU-------------UGGCCGUC-UUCC- -5'
30170 5' -54.3 NC_006273.1 + 44791 0.67 0.973675
Target:  5'- gCCgCGGccGAUGGgcGCCGGCGGAc-- -3'
miRNA:   3'- aGGgGCCaaCUACU--UGGCCGUCUucc -5'
30170 5' -54.3 NC_006273.1 + 140651 0.67 0.970986
Target:  5'- --gCCGGgaaGggGAGCUGGguGggGGa -3'
miRNA:   3'- aggGGCCaa-CuaCUUGGCCguCuuCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.