miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30170 5' -54.3 NC_006273.1 + 162452 1.12 0.004869
Target:  5'- aUCCCCGGUUGAUGAACCGGCAGAAGGa -3'
miRNA:   3'- -AGGGGCCAACUACUUGGCCGUCUUCC- -5'
30170 5' -54.3 NC_006273.1 + 104120 0.72 0.810198
Target:  5'- cCCUCGGUgugcccgaagacgcUGAUGAACCacgagggcgagguggGGCAGAGGa -3'
miRNA:   3'- aGGGGCCA--------------ACUACUUGG---------------CCGUCUUCc -5'
30170 5' -54.3 NC_006273.1 + 140774 0.72 0.826156
Target:  5'- uUCCgCGGcgGGUGGaccgggaaGCCGGCGGAGGu -3'
miRNA:   3'- -AGGgGCCaaCUACU--------UGGCCGUCUUCc -5'
30170 5' -54.3 NC_006273.1 + 199641 0.72 0.834316
Target:  5'- uUCCCCGGcuuuagUGAUGccauCgGGCAGgcGGa -3'
miRNA:   3'- -AGGGGCCa-----ACUACuu--GgCCGUCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 190325 0.72 0.8423
Target:  5'- aUUCCCGGUaacgGAUGAGauaCGcGCAGAGGa -3'
miRNA:   3'- -AGGGGCCAa---CUACUUg--GC-CGUCUUCc -5'
30170 5' -54.3 NC_006273.1 + 141026 0.71 0.872365
Target:  5'- gCCCCGGaUGGUGcuCCagGGCGGuGGGa -3'
miRNA:   3'- aGGGGCCaACUACuuGG--CCGUCuUCC- -5'
30170 5' -54.3 NC_006273.1 + 5650 0.7 0.899171
Target:  5'- aCCCCGGUuaaugcggUGGUGGuagGCCcGCgAGAAGGc -3'
miRNA:   3'- aGGGGCCA--------ACUACU---UGGcCG-UCUUCC- -5'
30170 5' -54.3 NC_006273.1 + 119098 0.7 0.905331
Target:  5'- uUCCUCGGUgGGUGGuaauCCGGgGGAcugcGGGa -3'
miRNA:   3'- -AGGGGCCAaCUACUu---GGCCgUCU----UCC- -5'
30170 5' -54.3 NC_006273.1 + 30453 0.69 0.916981
Target:  5'- aCgCCGGcgGAUGAGgaGGCGGAGGa -3'
miRNA:   3'- aGgGGCCaaCUACUUggCCGUCUUCc -5'
30170 5' -54.3 NC_006273.1 + 83214 0.69 0.922468
Target:  5'- -gCCCGGUUGAUGuAACCGcGCAa---- -3'
miRNA:   3'- agGGGCCAACUAC-UUGGC-CGUcuucc -5'
30170 5' -54.3 NC_006273.1 + 83336 0.69 0.927728
Target:  5'- -aCCCGGcgUGGUGGGacCCGGCggcgccgugguGGGAGGa -3'
miRNA:   3'- agGGGCCa-ACUACUU--GGCCG-----------UCUUCC- -5'
30170 5' -54.3 NC_006273.1 + 8351 0.69 0.932762
Target:  5'- gCCgCCGGUUGGUG-GCUGGCGGc--- -3'
miRNA:   3'- aGG-GGCCAACUACuUGGCCGUCuucc -5'
30170 5' -54.3 NC_006273.1 + 188034 0.69 0.94215
Target:  5'- gUCgCCGGUUucgggcGAUGAcagcGCCGGCGGcgcGGGu -3'
miRNA:   3'- -AGgGGCCAA------CUACU----UGGCCGUCu--UCC- -5'
30170 5' -54.3 NC_006273.1 + 141680 0.68 0.958258
Target:  5'- cCCCCGGUuccgGAgGAGaaGGgGGggGGu -3'
miRNA:   3'- aGGGGCCAa---CUaCUUggCCgUCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 163829 0.67 0.964388
Target:  5'- gCUCCGGUUGucgcaagucGCCGGCAGcggccgccggcGAGGg -3'
miRNA:   3'- aGGGGCCAACuacu-----UGGCCGUC-----------UUCC- -5'
30170 5' -54.3 NC_006273.1 + 1741 0.67 0.965028
Target:  5'- gCgCCGGc-GGUGGGCCGGCAcGAcGGu -3'
miRNA:   3'- aGgGGCCaaCUACUUGGCCGU-CUuCC- -5'
30170 5' -54.3 NC_006273.1 + 187174 0.67 0.965028
Target:  5'- gUCCCUGGaagcgUGuGUGGGCCGGCccucGGGg -3'
miRNA:   3'- -AGGGGCCa----AC-UACUUGGCCGucu-UCC- -5'
30170 5' -54.3 NC_006273.1 + 196633 0.67 0.965028
Target:  5'- gCgCCGGc-GGUGGGCCGGCAcGAcGGu -3'
miRNA:   3'- aGgGGCCaaCUACUUGGCCGU-CUuCC- -5'
30170 5' -54.3 NC_006273.1 + 140651 0.67 0.970986
Target:  5'- --gCCGGgaaGggGAGCUGGguGggGGa -3'
miRNA:   3'- aggGGCCaa-CuaCUUGGCCguCuuCC- -5'
30170 5' -54.3 NC_006273.1 + 140189 0.67 0.970986
Target:  5'- aCCCCGGcUGGgcGGCCgauGGgGGGAGGg -3'
miRNA:   3'- aGGGGCCaACUacUUGG---CCgUCUUCC- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.