Results 1 - 20 of 39 are showing below:
Show page:
<< Previous Page | Next Page >>
ID | Location | Perfect MFE.* | RefSeq Acc. | strand |
Start Position![]() |
R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 1741 | 0.67 | 0.965028 |
Target: 5'- gCgCCGGc-GGUGGGCCGGCAcGAcGGu -3' miRNA: 3'- aGgGGCCaaCUACUUGGCCGU-CUuCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 5650 | 0.7 | 0.899171 |
Target: 5'- aCCCCGGUuaaugcggUGGUGGuagGCCcGCgAGAAGGc -3' miRNA: 3'- aGGGGCCA--------ACUACU---UGGcCG-UCUUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 8351 | 0.69 | 0.932762 |
Target: 5'- gCCgCCGGUUGGUG-GCUGGCGGc--- -3' miRNA: 3'- aGG-GGCCAACUACuUGGCCGUCuucc -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 20633 | 0.67 | 0.976179 |
Target: 5'- aCCgCCGGcacccacGGUGcuCCGGCAGAacgAGGa -3' miRNA: 3'- aGG-GGCCaa-----CUACuuGGCCGUCU---UCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 30453 | 0.69 | 0.916981 |
Target: 5'- aCgCCGGcgGAUGAGgaGGCGGAGGa -3' miRNA: 3'- aGgGGCCaaCUACUUggCCGUCUUCc -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 38126 | 0.66 | 0.984473 |
Target: 5'- cUCCCCGGcgcgcucGGGCCGGCG--AGGc -3' miRNA: 3'- -AGGGGCCaacua--CUUGGCCGUcuUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 44791 | 0.67 | 0.973675 |
Target: 5'- gCCgCGGccGAUGGgcGCCGGCGGAc-- -3' miRNA: 3'- aGGgGCCaaCUACU--UGGCCGUCUucc -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 80791 | 0.66 | 0.986152 |
Target: 5'- cUCCCCcucc-GUGAGCCuGGaCGGAGGGg -3' miRNA: 3'- -AGGGGccaacUACUUGG-CC-GUCUUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 83214 | 0.69 | 0.922468 |
Target: 5'- -gCCCGGUUGAUGuAACCGcGCAa---- -3' miRNA: 3'- agGGGCCAACUAC-UUGGC-CGUcuucc -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 83336 | 0.69 | 0.927728 |
Target: 5'- -aCCCGGcgUGGUGGGacCCGGCggcgccgugguGGGAGGa -3' miRNA: 3'- agGGGCCa-ACUACUU--GGCCG-----------UCUUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 94834 | 0.66 | 0.982643 |
Target: 5'- ---aCGGUaGGUGGGCCGGguGGAcGGu -3' miRNA: 3'- agggGCCAaCUACUUGGCCguCUU-CC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 95578 | 0.66 | 0.982643 |
Target: 5'- aCCCCGGcgGAccccgGAGaccugaCGGCAGuuGAGGg -3' miRNA: 3'- aGGGGCCaaCUa----CUUg-----GCCGUC--UUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 99991 | 0.66 | 0.980656 |
Target: 5'- cUCCCCGcuGUUGucc-GCCGGCAGu-GGc -3' miRNA: 3'- -AGGGGC--CAACuacuUGGCCGUCuuCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 104120 | 0.72 | 0.810198 |
Target: 5'- cCCUCGGUgugcccgaagacgcUGAUGAACCacgagggcgagguggGGCAGAGGa -3' miRNA: 3'- aGGGGCCA--------------ACUACUUGG---------------CCGUCUUCc -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 105960 | 0.67 | 0.978504 |
Target: 5'- gUCCuaGGg-GGUGAcugcccACCGGCAGAuAGGu -3' miRNA: 3'- -AGGggCCaaCUACU------UGGCCGUCU-UCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 114143 | 0.66 | 0.982643 |
Target: 5'- --aCCuGUUGAUGAACgGGCAGcaaaucuuccugGAGGu -3' miRNA: 3'- aggGGcCAACUACUUGgCCGUC------------UUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 119098 | 0.7 | 0.905331 |
Target: 5'- uUCCUCGGUgGGUGGuaauCCGGgGGAcugcGGGa -3' miRNA: 3'- -AGGGGCCAaCUACUu---GGCCgUCU----UCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 127086 | 0.66 | 0.987688 |
Target: 5'- -gCCCGGUUGuUGGucaugGCgGGCAuGAGGc -3' miRNA: 3'- agGGGCCAACuACU-----UGgCCGUcUUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 140189 | 0.67 | 0.970986 |
Target: 5'- aCCCCGGcUGGgcGGCCgauGGgGGGAGGg -3' miRNA: 3'- aGGGGCCaACUacUUGG---CCgUCUUCC- -5' |
|||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 140361 | 0.67 | 0.976179 |
Target: 5'- cCCCCGGUcac--GACUGGCGGccGGa -3' miRNA: 3'- aGGGGCCAacuacUUGGCCGUCuuCC- -5' |
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home