Results 1 - 20 of 39 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
30170 | 5' | -54.3 | NC_006273.1 | + | 162452 | 1.12 | 0.004869 |
Target: 5'- aUCCCCGGUUGAUGAACCGGCAGAAGGa -3' miRNA: 3'- -AGGGGCCAACUACUUGGCCGUCUUCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 20633 | 0.67 | 0.976179 |
Target: 5'- aCCgCCGGcacccacGGUGcuCCGGCAGAacgAGGa -3' miRNA: 3'- aGG-GGCCaa-----CUACuuGGCCGUCU---UCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 105960 | 0.67 | 0.978504 |
Target: 5'- gUCCuaGGg-GGUGAcugcccACCGGCAGAuAGGu -3' miRNA: 3'- -AGGggCCaaCUACU------UGGCCGUCU-UCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 99991 | 0.66 | 0.980656 |
Target: 5'- cUCCCCGcuGUUGucc-GCCGGCAGu-GGc -3' miRNA: 3'- -AGGGGC--CAACuacuUGGCCGUCuuCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 94834 | 0.66 | 0.982643 |
Target: 5'- ---aCGGUaGGUGGGCCGGguGGAcGGu -3' miRNA: 3'- agggGCCAaCUACUUGGCCguCUU-CC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 38126 | 0.66 | 0.984473 |
Target: 5'- cUCCCCGGcgcgcucGGGCCGGCG--AGGc -3' miRNA: 3'- -AGGGGCCaacua--CUUGGCCGUcuUCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 166226 | 0.66 | 0.984473 |
Target: 5'- aUCCCC-GUUGuugGAGgUGGUAGAAGu -3' miRNA: 3'- -AGGGGcCAACua-CUUgGCCGUCUUCc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 184414 | 0.66 | 0.986152 |
Target: 5'- aUCCCGGUgucuAUGucgGCCGGCGGugcuGGc -3' miRNA: 3'- aGGGGCCAac--UACu--UGGCCGUCuu--CC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 127086 | 0.66 | 0.987688 |
Target: 5'- -gCCCGGUUGuUGGucaugGCgGGCAuGAGGc -3' miRNA: 3'- agGGGCCAACuACU-----UGgCCGUcUUCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 196633 | 0.67 | 0.965028 |
Target: 5'- gCgCCGGc-GGUGGGCCGGCAcGAcGGu -3' miRNA: 3'- aGgGGCCaaCUACUUGGCCGU-CUuCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 163829 | 0.67 | 0.964388 |
Target: 5'- gCUCCGGUUGucgcaagucGCCGGCAGcggccgccggcGAGGg -3' miRNA: 3'- aGGGGCCAACuacu-----UGGCCGUC-----------UUCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 104120 | 0.72 | 0.810198 |
Target: 5'- cCCUCGGUgugcccgaagacgcUGAUGAACCacgagggcgagguggGGCAGAGGa -3' miRNA: 3'- aGGGGCCA--------------ACUACUUGG---------------CCGUCUUCc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 199641 | 0.72 | 0.834316 |
Target: 5'- uUCCCCGGcuuuagUGAUGccauCgGGCAGgcGGa -3' miRNA: 3'- -AGGGGCCa-----ACUACuu--GgCCGUCuuCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 190325 | 0.72 | 0.8423 |
Target: 5'- aUUCCCGGUaacgGAUGAGauaCGcGCAGAGGa -3' miRNA: 3'- -AGGGGCCAa---CUACUUg--GC-CGUCUUCc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 119098 | 0.7 | 0.905331 |
Target: 5'- uUCCUCGGUgGGUGGuaauCCGGgGGAcugcGGGa -3' miRNA: 3'- -AGGGGCCAaCUACUu---GGCCgUCU----UCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 30453 | 0.69 | 0.916981 |
Target: 5'- aCgCCGGcgGAUGAGgaGGCGGAGGa -3' miRNA: 3'- aGgGGCCaaCUACUUggCCGUCUUCc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 83214 | 0.69 | 0.922468 |
Target: 5'- -gCCCGGUUGAUGuAACCGcGCAa---- -3' miRNA: 3'- agGGGCCAACUAC-UUGGC-CGUcuucc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 8351 | 0.69 | 0.932762 |
Target: 5'- gCCgCCGGUUGGUG-GCUGGCGGc--- -3' miRNA: 3'- aGG-GGCCAACUACuUGGCCGUCuucc -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 188034 | 0.69 | 0.94215 |
Target: 5'- gUCgCCGGUUucgggcGAUGAcagcGCCGGCGGcgcGGGu -3' miRNA: 3'- -AGgGGCCAA------CUACU----UGGCCGUCu--UCC- -5' |
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30170 | 5' | -54.3 | NC_006273.1 | + | 211991 | 0.66 | 0.986152 |
Target: 5'- gUCCUCGGUgcguaaccgcUGGUaucGAugCGGCAGgcGa -3' miRNA: 3'- -AGGGGCCA----------ACUA---CUugGCCGUCuuCc -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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