miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 103163 0.66 0.999517
Target:  5'- gGGGAGGgGAuGAacacaggcccgauguGGCugc-GGCCGCCg -3'
miRNA:   3'- -CCCUCCgCUuCU---------------CUGuuuuCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 20886 0.66 0.999517
Target:  5'- aGGAGGUcacagGAGGAGAacgagGAAGGuggaccgugugaaucGCCGCCa -3'
miRNA:   3'- cCCUCCG-----CUUCUCUg----UUUUC---------------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 83493 0.66 0.999475
Target:  5'- --cAGGUGGAcGAGAUccAGGACCugCg -3'
miRNA:   3'- cccUCCGCUU-CUCUGuuUUCUGGugG- -5'
30171 5' -50.5 NC_006273.1 + 95884 0.66 0.999463
Target:  5'- aGGAGcgcuacGCGGAGcuGCAGAAGcgcaagaGCCACCc -3'
miRNA:   3'- cCCUC------CGCUUCucUGUUUUC-------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 133240 0.66 0.999354
Target:  5'- --uGGGCGAGGAGAUGcuGGGCauguugGCCg -3'
miRNA:   3'- cccUCCGCUUCUCUGUuuUCUGg-----UGG- -5'
30171 5' -50.5 NC_006273.1 + 164543 0.66 0.999209
Target:  5'- aGGGAgGGCGGc--GGCGGucGGCCcGCCa -3'
miRNA:   3'- -CCCU-CCGCUucuCUGUUuuCUGG-UGG- -5'
30171 5' -50.5 NC_006273.1 + 227436 0.66 0.999209
Target:  5'- cGGGAcGGUGAuGAGGaaacugGAGAGAgCCACa -3'
miRNA:   3'- -CCCU-CCGCUuCUCUg-----UUUUCU-GGUGg -5'
30171 5' -50.5 NC_006273.1 + 120356 0.66 0.999209
Target:  5'- cGGGAugGGgGGAGGGuCAGGGGAUgCGCa -3'
miRNA:   3'- -CCCU--CCgCUUCUCuGUUUUCUG-GUGg -5'
30171 5' -50.5 NC_006273.1 + 134839 0.66 0.999209
Target:  5'- -cGGGGUGggGccGGACAGguGAGccaggugaGCCGCCa -3'
miRNA:   3'- ccCUCCGCuuC--UCUGUU--UUC--------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 47467 0.66 0.999209
Target:  5'- gGGGAcgaGGaCGAAGAG-CAGGAGaacgacggcgaGCCGCg -3'
miRNA:   3'- -CCCU---CC-GCUUCUCuGUUUUC-----------UGGUGg -5'
30171 5' -50.5 NC_006273.1 + 56017 0.66 0.999209
Target:  5'- cGGAGGUGAcAGAGcaGCGGAAGGuCUcguugACCa -3'
miRNA:   3'- cCCUCCGCU-UCUC--UGUUUUCU-GG-----UGG- -5'
30171 5' -50.5 NC_006273.1 + 149439 0.66 0.999038
Target:  5'- cGGGGGGCGAcggccccgAG-GGCGAGGuuauUCACCu -3'
miRNA:   3'- -CCCUCCGCU--------UCuCUGUUUUcu--GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 101340 0.66 0.999038
Target:  5'- gGGGAGGaGGAuAGugGuccGGAUCGCCu -3'
miRNA:   3'- -CCCUCCgCUUcUCugUuu-UCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 95281 0.66 0.999038
Target:  5'- uGGGuguGGCcggaagcgcucGggGucGACGGuGGGCCGCCa -3'
miRNA:   3'- -CCCu--CCG-----------CuuCu-CUGUUuUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 109709 0.66 0.999038
Target:  5'- gGGGAcgguggcaucGGgGAAGAGACGcguGAGGCguUCg -3'
miRNA:   3'- -CCCU----------CCgCUUCUCUGUu--UUCUGguGG- -5'
30171 5' -50.5 NC_006273.1 + 69727 0.66 0.999038
Target:  5'- aGGuGGUGAcguaGGGGAacAGAGACCggGCCg -3'
miRNA:   3'- cCCuCCGCU----UCUCUguUUUCUGG--UGG- -5'
30171 5' -50.5 NC_006273.1 + 218200 0.66 0.999038
Target:  5'- uGGGcGGCGGcc-GACGGcGGACgACCg -3'
miRNA:   3'- -CCCuCCGCUucuCUGUUuUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 111283 0.66 0.999038
Target:  5'- aGGuGGCuGAAGAGACAGAcGGCgAg- -3'
miRNA:   3'- cCCuCCG-CUUCUCUGUUUuCUGgUgg -5'
30171 5' -50.5 NC_006273.1 + 61926 0.66 0.999038
Target:  5'- -cGAcGGCGGcGGAGACG-AGGACCgguuGCCg -3'
miRNA:   3'- ccCU-CCGCU-UCUCUGUuUUCUGG----UGG- -5'
30171 5' -50.5 NC_006273.1 + 135967 0.66 0.999038
Target:  5'- aGGAGGUgcugaguaacGAGGAGGCc-GAGACgCugCg -3'
miRNA:   3'- cCCUCCG----------CUUCUCUGuuUUCUG-GugG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.