miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 87437 0.66 0.999038
Target:  5'- --cGGGCGAcGGGGGCucGGAGAUgACCg -3'
miRNA:   3'- cccUCCGCU-UCUCUGu-UUUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 105552 0.66 0.998836
Target:  5'- cGGGAGGCGguGAuGuCAcc-GACCAUg -3'
miRNA:   3'- -CCCUCCGCuuCU-CuGUuuuCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 71833 0.66 0.998836
Target:  5'- -uGAGaCGcAGGAGACGcgGGACCGCa -3'
miRNA:   3'- ccCUCcGC-UUCUCUGUuuUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 69727 0.66 0.999038
Target:  5'- aGGuGGUGAcguaGGGGAacAGAGACCggGCCg -3'
miRNA:   3'- cCCuCCGCU----UCUCUguUUUCUGG--UGG- -5'
30171 5' -50.5 NC_006273.1 + 120356 0.66 0.999209
Target:  5'- cGGGAugGGgGGAGGGuCAGGGGAUgCGCa -3'
miRNA:   3'- -CCCU--CCgCUUCUCuGUUUUCUG-GUGg -5'
30171 5' -50.5 NC_006273.1 + 103163 0.66 0.999517
Target:  5'- gGGGAGGgGAuGAacacaggcccgauguGGCugc-GGCCGCCg -3'
miRNA:   3'- -CCCUCCgCUuCU---------------CUGuuuuCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 47467 0.66 0.999209
Target:  5'- gGGGAcgaGGaCGAAGAG-CAGGAGaacgacggcgaGCCGCg -3'
miRNA:   3'- -CCCU---CC-GCUUCUCuGUUUUC-----------UGGUGg -5'
30171 5' -50.5 NC_006273.1 + 134839 0.66 0.999209
Target:  5'- -cGGGGUGggGccGGACAGguGAGccaggugaGCCGCCa -3'
miRNA:   3'- ccCUCCGCuuC--UCUGUU--UUC--------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 61926 0.66 0.999038
Target:  5'- -cGAcGGCGGcGGAGACG-AGGACCgguuGCCg -3'
miRNA:   3'- ccCU-CCGCU-UCUCUGUuUUCUGG----UGG- -5'
30171 5' -50.5 NC_006273.1 + 123630 0.66 0.998836
Target:  5'- uGGGcGuGCGGgaaAGAGAgAGAAGGCCGg- -3'
miRNA:   3'- -CCCuC-CGCU---UCUCUgUUUUCUGGUgg -5'
30171 5' -50.5 NC_006273.1 + 111507 0.66 0.998836
Target:  5'- aGGGAGaaGAGGGGACAcgcGAGuaaGCCauGCCg -3'
miRNA:   3'- -CCCUCcgCUUCUCUGUu--UUC---UGG--UGG- -5'
30171 5' -50.5 NC_006273.1 + 164543 0.66 0.999209
Target:  5'- aGGGAgGGCGGc--GGCGGucGGCCcGCCa -3'
miRNA:   3'- -CCCU-CCGCUucuCUGUUuuCUGG-UGG- -5'
30171 5' -50.5 NC_006273.1 + 135967 0.66 0.999038
Target:  5'- aGGAGGUgcugaguaacGAGGAGGCc-GAGACgCugCg -3'
miRNA:   3'- cCCUCCG----------CUUCUCUGuuUUCUG-GugG- -5'
30171 5' -50.5 NC_006273.1 + 95281 0.66 0.999038
Target:  5'- uGGGuguGGCcggaagcgcucGggGucGACGGuGGGCCGCCa -3'
miRNA:   3'- -CCCu--CCG-----------CuuCu-CUGUUuUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 218200 0.66 0.999038
Target:  5'- uGGGcGGCGGcc-GACGGcGGACgACCg -3'
miRNA:   3'- -CCCuCCGCUucuCUGUUuUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 27114 0.66 0.999038
Target:  5'- cGGuGGUGAgcuGGGGAac-AGGGCUACCu -3'
miRNA:   3'- cCCuCCGCU---UCUCUguuUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 111283 0.66 0.999038
Target:  5'- aGGuGGCuGAAGAGACAGAcGGCgAg- -3'
miRNA:   3'- cCCuCCG-CUUCUCUGUUUuCUGgUgg -5'
30171 5' -50.5 NC_006273.1 + 101340 0.66 0.999038
Target:  5'- gGGGAGGaGGAuAGugGuccGGAUCGCCu -3'
miRNA:   3'- -CCCUCCgCUUcUCugUuu-UCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 109709 0.66 0.999038
Target:  5'- gGGGAcgguggcaucGGgGAAGAGACGcguGAGGCguUCg -3'
miRNA:   3'- -CCCU----------CCgCUUCUCUGUu--UUCUGguGG- -5'
30171 5' -50.5 NC_006273.1 + 34050 0.66 0.999038
Target:  5'- cGGAgGGCGAcaaagaGGAGugGuc--GCCGCCg -3'
miRNA:   3'- cCCU-CCGCU------UCUCugUuuucUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.