miRNA display CGI


Results 1 - 20 of 173 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
30171 5' -50.5 NC_006273.1 + 162682 1.17 0.005915
Target:  5'- cGGGAGGCGAAGAGACAAAAGACCACCg -3'
miRNA:   3'- -CCCUCCGCUUCUCUGUUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 29118 0.8 0.659505
Target:  5'- aGGGuGGCGGAGGGcCAGaaGAGGCgGCCu -3'
miRNA:   3'- -CCCuCCGCUUCUCuGUU--UUCUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 190385 0.79 0.669696
Target:  5'- aGGGAGGa-GAGGGACGGGAacGAUCACCg -3'
miRNA:   3'- -CCCUCCgcUUCUCUGUUUU--CUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 38514 0.79 0.688969
Target:  5'- aGGGAGGacgaaggaGggGAGACGAGgacgacgGGcACCACCg -3'
miRNA:   3'- -CCCUCCg-------CuuCUCUGUUU-------UC-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 149483 0.79 0.698043
Target:  5'- cGGGAGGCGAugucGGGGACGGGuacgacuuugauGACgGCCa -3'
miRNA:   3'- -CCCUCCGCU----UCUCUGUUUu-----------CUGgUGG- -5'
30171 5' -50.5 NC_006273.1 + 118135 0.78 0.723981
Target:  5'- uGGAGGCGAcGGGGACgAAGAGggaacgcgcgccccaGCCGCCg -3'
miRNA:   3'- cCCUCCGCU-UCUCUG-UUUUC---------------UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 1984 0.78 0.752275
Target:  5'- gGGGAcgacgucgcgccagcGGCGAgcggcacGGAGAC-GGAGGCCGCCg -3'
miRNA:   3'- -CCCU---------------CCGCU-------UCUCUGuUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 136868 0.77 0.777822
Target:  5'- cGGaGGGGgGAAGAGGCAcgacgagcGAGGGCC-CCg -3'
miRNA:   3'- -CC-CUCCgCUUCUCUGU--------UUUCUGGuGG- -5'
30171 5' -50.5 NC_006273.1 + 170351 0.76 0.813872
Target:  5'- aGGAGGaGAAG-GACAAGuauccgGGACCACCc -3'
miRNA:   3'- cCCUCCgCUUCuCUGUUU------UCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 140208 0.76 0.813872
Target:  5'- uGGGGGGaGggGAGugG-GGGACCACg -3'
miRNA:   3'- -CCCUCCgCuuCUCugUuUUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 113537 0.76 0.847288
Target:  5'- cGGGcGGCGAAGAGA---AGGGCUACg -3'
miRNA:   3'- -CCCuCCGCUUCUCUguuUUCUGGUGg -5'
30171 5' -50.5 NC_006273.1 + 165463 0.75 0.869591
Target:  5'- gGGGAGGUGGucgGGGGGCAuuuuguguguguuAuuGACUACCg -3'
miRNA:   3'- -CCCUCCGCU---UCUCUGU-------------UuuCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 29819 0.75 0.87759
Target:  5'- uGGGAgugguGGCGGcagccacggaGGAGACGAGAGAacCUACCu -3'
miRNA:   3'- -CCCU-----CCGCU----------UCUCUGUUUUCU--GGUGG- -5'
30171 5' -50.5 NC_006273.1 + 196863 0.74 0.89804
Target:  5'- cGGGGccGGCGAcGGGGACGAcgucGCCGCCa -3'
miRNA:   3'- -CCCU--CCGCU-UCUCUGUUuuc-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 140738 0.74 0.9044
Target:  5'- gGGGAGGgGAAG-GGCGc-GGACC-CCg -3'
miRNA:   3'- -CCCUCCgCUUCuCUGUuuUCUGGuGG- -5'
30171 5' -50.5 NC_006273.1 + 136678 0.74 0.910525
Target:  5'- -uGAGGaCGAGGAGACGAc-GACCgGCCg -3'
miRNA:   3'- ccCUCC-GCUUCUCUGUUuuCUGG-UGG- -5'
30171 5' -50.5 NC_006273.1 + 72546 0.74 0.910525
Target:  5'- cGGAGGaUGAGGAcGAguaauugaGAAAGGCCACCg -3'
miRNA:   3'- cCCUCC-GCUUCU-CUg-------UUUUCUGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 117225 0.74 0.916415
Target:  5'- gGGGAGGaagaGGccgcAGAGGgGAGAG-CCGCCg -3'
miRNA:   3'- -CCCUCCg---CU----UCUCUgUUUUCuGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 163129 0.74 0.916415
Target:  5'- aGGGcuccGGCuGAGGcGGCGGAGGcACCACCg -3'
miRNA:   3'- -CCCu---CCG-CUUCuCUGUUUUC-UGGUGG- -5'
30171 5' -50.5 NC_006273.1 + 196896 0.73 0.921512
Target:  5'- ---cGGCGAgcggcacGGAGAC-GGAGGCCGCCg -3'
miRNA:   3'- cccuCCGCU-------UCUCUGuUUUCUGGUGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.